Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq120 98.7 1e-15 seq46 84.2 2e-11 >seq120 Length=764448 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | || || || | || || || || || |||||||||||| Sbjct 228518 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGCG 228577 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| |||||||| || || || || Sbjct 228578 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 228637 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||| || || | | || | |||||||| || || || Sbjct 228638 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 228697 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || || ||||| |||||||| Sbjct 228698 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 228744 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | || || || | || || || || || |||||||||||| Sbjct 228290 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGCG 228349 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| |||||||| || || || || Sbjct 228350 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 228409 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| ||| || || | | || | |||||||| || || || Sbjct 228410 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 228469 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| || || ||||| || |||||| Sbjct 228470 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 228517 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||| | || || || | || || || ||||| || ||||||||| Sbjct 228059 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTTTGGATATTGTAATCG 228118 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| || || || || || ||||| |||| |||||||| || || || Sbjct 228119 GCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGG 228178 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| |||||||| ||| || || | | || | |||||||| || || Sbjct 228179 GGAATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 228238 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || | |||||||||||||| || || ||||| || |||||| Sbjct 228239 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATA 228289 >seq46 Length=591722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/236 (68%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 142951 GACATGG-CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGT 143009 ||||| | || || || | ||||| || || || | || || || || || ||||||| Sbjct 538458 GACATTGACCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGT 538517 Query 143010 AATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGAT 143069 |||| | |||| || ||||| || || ||||| |||| |||||||| || | Sbjct 538518 AATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGT 538577 Query 143070 CGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGG 143129 | || || ||||| || ||||| || || || | | || | |||||||| || Sbjct 538578 CTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCAATCGTGTCCGAGG 538637 Query 143130 GTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| || || | || | ||||||||| || | || || ||||| ||||||||| Sbjct 538638 ATTCGACCTCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAAATTTGCATA 538693 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || || |||| || || || || || ||||||||||| Sbjct 538694 CCACCGCGGAGACGCAACACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 538753 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||||| ||||| || || || || Sbjct 538754 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGA 538813 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| ||| || || | | || | |||||||| | || || Sbjct 538814 ATGCCCTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACC 538873 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||||||| || | || || ||||| ||||||||| Sbjct 538874 TCGAGCGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCATA 538921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012986697360