Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq120 89.7 1e-12 >seq120 Length=764448 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || | || || | || || || || || || ||| Sbjct 228320 GTCGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCA 228379 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| || || || || || ||||| ||||||||||| || || Sbjct 228380 GCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTG 228439 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 228440 ACGTTGTCGATCGTGTC-CGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGT 228498 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 228499 CTTGACGAAGATCTGCAT 228516 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || ||||| || || | || || | || || || || || || ||| Sbjct 228092 GTCGACTCCTTTTGGATATTGTAATCGGCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCA 228151 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| || || || || || ||||| ||||||||||| || || Sbjct 228152 GCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTG 228211 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 228212 ACGTTGTCGATCGTGTC-CGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGT 228270 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 228271 CTTGACGAAGATCTGCAT 228288 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || | || || | || || || || || || ||| Sbjct 228548 GTCGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCA 228607 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||| || || || || || ||||| ||||||||||| || || Sbjct 228608 GCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGAATCTTGGCCTTG 228667 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | ||| || ||||| || || || ||||| || || || || Sbjct 228668 ACGTTGTCGATCGTGTC-CGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGT 228726 Query 104542 TTTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 228727 CTTGACGAAGATTTGCAT 228744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395110238884