Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq90 181 2e-41 seq115 168 1e-37 seq64 163 4e-36 >seq90 Length=438655 Score = 181 bits (200), Expect = 2e-41 Identities = 160/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 228897 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGTCGTGGTGGT 228956 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || ||| |||| ||||||| ||| | ||| | |||||||||||| Sbjct 228957 GTCAAGCGTATCTCCGGCTTGATCTACGAAGAGACTCGAGGCGTTCTCAAGATCTTCCTC 229016 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||||||||| || || ||||| ||||| Sbjct 229017 GAGAACGTCATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACT 229076 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 229077 TCGCTCGATGTCGTCTACGC 229096 >seq115 Length=605796 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 226845 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 226904 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| || | ||| | |||||||||||| Sbjct 226905 GTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 226964 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||| | | ||| ||||||||||| || || ||||| |||||| Sbjct 226965 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 227024 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 227025 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 227080 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 310671 CGTGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 310612 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| ||||||| || | ||| | |||||||||||| Sbjct 310611 GTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACCCGAGGTGTGCTCAAGATCTTCCTC 310552 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| |||| | | ||| ||||||||||| || || ||||| |||||| Sbjct 310551 GAGAACGTGATCCGTGATTCGGTGACCTACACCGAGCACGCCAAGCGCAAGACGGTCACC 310492 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||| ||||||| || |||| || ||||| | | | || ||||| || Sbjct 310491 TCGCTCGATGTCGTCTACGCCCTGAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 310436 >seq64 Length=2761491 Score = 163 bits (180), Expect = 4e-36 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 716682 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 716623 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 716622 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 716563 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| |||||| Sbjct 716562 GAGAACGTCATCCGTGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 716503 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 716502 TCGCTCGATGTCGTCTACGC 716483 Score = 163 bits (180), Expect = 4e-36 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || ||||| ||||| || ||||||||||| Sbjct 764937 CGCGATAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCGCGTCGTGGTGGT 764996 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||||||| Sbjct 764997 GTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGAGGTGTGCTCAAGATCTTCCTC 765056 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| |||||| Sbjct 765057 GAGAACGTCATCCGTGACTCAGTCACCTACACCGAACACGCCAAGCGCAAGACGGTCACC 765116 Query 16637 TCCATGGATATCGTCTATGC 16656 || | ||| ||||||| || Sbjct 765117 TCGCTCGATGTCGTCTACGC 765136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074996109539