Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq152 140 2e-28 seq142 140 2e-28 seq119 140 2e-28 seq66 140 2e-28 seq43 109 4e-19 >seq152 Length=32931 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4907 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4848 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4847 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4813 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15813 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15754 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15753 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15719 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 26722 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 26663 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 26662 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 26628 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1468 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1409 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1408 GCCAATATTTAGCTTTA 1392 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 12372 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 12313 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 12312 GCCAATATTTAGCTTTA 12296 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 23281 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 23222 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 23221 GCCAATATTTAGCTTTA 23205 >seq142 Length=24339 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2081 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2022 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2021 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1987 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 12949 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12890 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 12889 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 12855 Score = 113 bits (124), Expect = 3e-20 Identities = 88/100 (88%), Gaps = 10/100 (10%) Strand=Plus/Minus Query 25902 AAGCCCG-TTCCCTTGGCTGTGG-TTTCGCTAGATAGTAGATAGGG-----GGTAATCTC 25954 ||||||| ||||||||||||||| |||||||||||||||||||||| || |||||| Sbjct 23824 AAGCCCGGTTCCCTTGGCTGTGGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 23765 Query 25955 GTTA--ATCCTTTCATGCGCGTCACT-AATTAGATGACGA 25991 |||| |||| ||||||||||||||| ||||||||||||| Sbjct 23764 GTTAATATCCATTCATGCGCGTCACTAAATTAGATGACGA 23725 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 9519 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 9460 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 9459 GCCAATATTTAGCTTTA 9443 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 20388 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 20329 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 20328 GCCAATATTTAGCTTTA 20312 >seq119 Length=26029 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6687 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6628 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6627 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6593 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 17593 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 17534 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 17533 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 17499 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3254 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3195 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 3194 GCCAATATTTAGCTTTA 3178 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 14153 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 14094 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 14093 GCCAATATTTAGCTTTA 14077 Score = 100 bits (110), Expect = 2e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 25010 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 24951 Query 20007 GGTAATATTTAGC 20019 | |||||||||| Sbjct 24950 GCCAATATTTAGC 24938 >seq66 Length=711016 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 706560 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 706501 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 706500 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 706466 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 703119 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 703060 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 703059 GCCAATATTTAGCTTTA 703043 >seq43 Length=1423701 Score = 109 bits (120), Expect = 4e-19 Identities = 274/406 (67%), Gaps = 9/406 (2%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCG-CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||||||||||||| ||||| ||| ||| ||||| ||||||| || ||||| | Sbjct 1326370 GTTCTACCGCTACAAGATGCCCTCGCTCCTGA-CCAAGATCGAGGGCCGCGGCAACGGCA 1326312 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA-CGCCCTGCCACC 6317 | ||||| || || ||||||| |||| ||||| || || | | ||||| | | Sbjct 1326311 TCAAAACTGTGTTTCCCAACATGGCTGATGTCGCGCGAGC-CTTGAATCGCCCGTCGTCG 1326253 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 |||||||| || | || ||||||||||| ||||| ||| || || | | | | | Sbjct 1326252 TACCCGACCAAGTTCTTTGGGTGCGAACTCGGCGCCCAGGCGACCTTCAACGATGAGACC 1326193 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || |||| ||| || || || |||| | | |||| ||||| || |||| | Sbjct 1326192 GAACGCTACATTGTCAATGGCGCGCACGAGACGAATCGTCTGCGTGACTTGCTCGACGTC 1326133 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || || |||||| |||||||| | ||| | ||||| || || ||||| || Sbjct 1326132 TTCATCGACAAGTTCGTGCTGTGCGCGTCGTGCAAGAACCCCGAAACGGAGCTCAT--CA 1326075 Query 6498 TCTACCAAGAGAAACACCATCTCTCAG-GGCTGCAAAGCGTGCGGTTACCATGGCAAGCT 6556 || | |||| || |||| ||| | | |||||| || ||||| | | ||||| | Sbjct 1326074 TCACCAAAGACGAA-TTCATC-CTCCGTGACTGCAAGGCCTGCGGCAAGCGCGGCAACGT 1326017 Query 6557 GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | |||||||||| |||||||| || ||||| || ||| Sbjct 1326016 CGACATGCGCCACAAACTCACGACCTTCATCCTTAAGAACCCCCCA 1325971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946289676313