Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12-
23] 223 sequences; 35,405,415 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq152 140 2e-28
seq142 140 2e-28
seq119 140 2e-28
seq66 140 2e-28
seq43 109 4e-19
>seq152
Length=32931
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4907 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4848
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 4847 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4813
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 15813 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15754
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 15753 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15719
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 26722 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 26663
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 26662 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 26628
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1468 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1409
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 1408 GCCAATATTTAGCTTTA 1392
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 12372 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 12313
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 12312 GCCAATATTTAGCTTTA 12296
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 23281 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 23222
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 23221 GCCAATATTTAGCTTTA 23205
>seq142
Length=24339
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2081 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2022
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2021 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1987
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 12949 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12890
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 12889 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 12855
Score = 113 bits (124), Expect = 3e-20
Identities = 88/100 (88%), Gaps = 10/100 (10%)
Strand=Plus/Minus
Query 25902 AAGCCCG-TTCCCTTGGCTGTGG-TTTCGCTAGATAGTAGATAGGG-----GGTAATCTC 25954
||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||
Sbjct 23824 AAGCCCGGTTCCCTTGGCTGTGGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 23765
Query 25955 GTTA--ATCCTTTCATGCGCGTCACT-AATTAGATGACGA 25991
|||| |||| ||||||||||||||| |||||||||||||
Sbjct 23764 GTTAATATCCATTCATGCGCGTCACTAAATTAGATGACGA 23725
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 9519 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 9460
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 9459 GCCAATATTTAGCTTTA 9443
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 20388 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 20329
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 20328 GCCAATATTTAGCTTTA 20312
>seq119
Length=26029
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6687 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6628
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6627 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6593
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 17593 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 17534
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 17533 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 17499
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 3254 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3195
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 3194 GCCAATATTTAGCTTTA 3178
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 14153 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 14094
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 14093 GCCAATATTTAGCTTTA 14077
Score = 100 bits (110), Expect = 2e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 25010 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 24951
Query 20007 GGTAATATTTAGC 20019
| ||||||||||
Sbjct 24950 GCCAATATTTAGC 24938
>seq66
Length=711016
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 706560 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 706501
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 706500 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 706466
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 703119 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 703060
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 703059 GCCAATATTTAGCTTTA 703043
>seq43
Length=1423701
Score = 109 bits (120), Expect = 4e-19
Identities = 274/406 (67%), Gaps = 9/406 (2%)
Strand=Plus/Minus
Query 6200 GTTCTACCGCTACAAAATGCCG-CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258
||||||||||||||| ||||| ||| ||| ||||| ||||||| || ||||| |
Sbjct 1326370 GTTCTACCGCTACAAGATGCCCTCGCTCCTGA-CCAAGATCGAGGGCCGCGGCAACGGCA 1326312
Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA-CGCCCTGCCACC 6317
| ||||| || || ||||||| |||| ||||| || || | | ||||| | |
Sbjct 1326311 TCAAAACTGTGTTTCCCAACATGGCTGATGTCGCGCGAGC-CTTGAATCGCCCGTCGTCG 1326253
Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377
|||||||| || | || ||||||||||| ||||| ||| || || | | | | |
Sbjct 1326252 TACCCGACCAAGTTCTTTGGGTGCGAACTCGGCGCCCAGGCGACCTTCAACGATGAGACC 1326193
Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437
|| |||| ||| || || || |||| | | |||| ||||| || |||| |
Sbjct 1326192 GAACGCTACATTGTCAATGGCGCGCACGAGACGAATCGTCTGCGTGACTTGCTCGACGTC 1326133
Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497
|| || |||||| |||||||| | ||| | ||||| || || ||||| ||
Sbjct 1326132 TTCATCGACAAGTTCGTGCTGTGCGCGTCGTGCAAGAACCCCGAAACGGAGCTCAT--CA 1326075
Query 6498 TCTACCAAGAGAAACACCATCTCTCAG-GGCTGCAAAGCGTGCGGTTACCATGGCAAGCT 6556
|| | |||| || |||| ||| | | |||||| || ||||| | | ||||| |
Sbjct 1326074 TCACCAAAGACGAA-TTCATC-CTCCGTGACTGCAAGGCCTGCGGCAAGCGCGGCAACGT 1326017
Query 6557 GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
|| | |||||||||| |||||||| || ||||| || |||
Sbjct 1326016 CGACATGCGCCACAAACTCACGACCTTCATCCTTAAGAACCCCCCA 1325971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946289676313
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |