Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12-
23] 223 sequences; 35,405,415 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq120 120 3e-22
seq82 113 4e-20
>seq120
Length=764448
Score = 120 bits (132), Expect = 3e-22
Identities = 167/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || | ||||| |||| || ||||| ||
Sbjct 228288 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 228229
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| |||| | || || | ||| |||||||| || ||||| || ||
Sbjct 228228 GACACGATCGACAACGTCA---AGGCCAAGATTCAG-GACAAAGAGGGCATTCCCCCAGA 228173
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||| || | || || || ||||| || | || |||| ||||| | | ||||||
Sbjct 228172 CCAACAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTCGCCGATTA 228113
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|||||| ||||| || || ||||| || || ||||| | || |||| |||
Sbjct 228112 CAATATCCAAAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGA 228061
>seq82
Length=702097
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060
|||||| ||||| |||||| | || || || | ||||| |||| || |||||||| ||
Sbjct 522998 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 522939
Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120
||| ||||| | ||| || ||| ||||| ||||| || || || ||||| ||
Sbjct 522938 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 522879
Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180
|| | || ||||||||||| || | || |||| ||||| ||| ||| ||||| ||
Sbjct 522878 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 522819
Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| || || || || ||
Sbjct 522818 CCAAAAGGAGTCCACCCTCCACTTGGTCCT 522789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433326822295745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |