Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq111 93.3 9e-14 seq49 87.8 4e-12 seq90 86.0 1e-11 >seq111 Length=630077 Score = 93.3 bits (102), Expect = 9e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 136336 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 136277 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| ||||||| | || || ||| ||||||||||||| Sbjct 136276 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGTTGCTCAACGTGCGT 136217 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 136216 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 136158 Query 218016 GGGTCTTCAG 218025 |||||| ||| Sbjct 136157 GGGTCTGCAG 136148 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 18693 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 18752 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 18753 CCCGCATTGGGC 18764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 247/380 (65%), Gaps = 0/380 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| |||||||| | || || |||||| | || | ||| ||||||||| Sbjct 135652 GATTTCATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGCTCTATTCCC 135593 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| |||| || || || ||| || | || | |||||||| Sbjct 135592 TCTGTCATTGATGGGTTCAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 135533 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || || || || ||||||| || || ||||| || |||| || | Sbjct 135532 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGAGGTTACGTCGCCGAGCACTCGGCG 135473 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | ||| |||| || | | || Sbjct 135472 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGCCTGGCGCAACAGTTCGTC 135413 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| |||||| | ||||| ||| Sbjct 135412 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTCTGCAAGGT 135353 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877 || || || ||||| || | || ||||| || || | || || | ||||| Sbjct 135352 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTCACGAATGTATCATCCATCACGCGTAGC 135293 Query 218878 GTGTTCAATCAGGCCGATGA 218897 || ||| ||| || ||||| Sbjct 135292 GTCTTCCATCCCGCTGATGA 135273 >seq49 Length=1027669 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 640138 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 640197 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 640198 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 640257 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 640258 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 640317 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 640318 GGCTTCCT 640325 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 646635 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 646576 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 646575 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 646516 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | ||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 646515 CTCGAGAATTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 646456 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 646455 GGCTTCCT 646448 >seq90 Length=438655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||| ||||| | ||||||||||| || |||| |||||||||| Sbjct 419344 GCCCGGTTAGCTCAGTCGGCAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 419285 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 419284 CCCGCATTGGGC 419273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833863277543