Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq46 140 4e-28 seq120 125 8e-24 seq115 120 3e-22 seq82 116 4e-21 >seq46 Length=591722 Score = 140 bits (154), Expect = 4e-28 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || |||||||| || || || || | Sbjct 538705 ACGCAACACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCC 538764 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || | ||| || ||||| | || | || |||||| Sbjct 538765 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTT 538824 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 |||| ||| | || || |||| ||| | | | |||||| ||| || || |||| |||| Sbjct 538825 GTCC-TGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTG 538882 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| |||||||| || ||||||||||| Sbjct 538883 ATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 538920 Score = 140 bits (154), Expect = 4e-28 Identities = 165/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || |||||||| || || || || | Sbjct 538933 ACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCC 538992 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| || | ||| || ||||| | || | || |||||| Sbjct 538993 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTT 539052 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 |||| ||| | || || |||| ||| | | | |||||| ||| || || |||| |||| Sbjct 539053 GTCC-TGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTG 539110 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| |||||||| |||||||| || ||||| ||||| Sbjct 539111 ATGGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 539148 >seq120 Length=764448 Score = 125 bits (138), Expect = 8e-24 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||| | |||||| |||| || |||||| ||||| |||||||| || Sbjct 228517 ACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 228576 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| |||||||| ||||| || || ||||| | || Sbjct 228577 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGG 228636 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 42158 | || ||| |||||| ||| | || | |||| ||| | | | |||||| || || Sbjct 228637 AATGCCCTCTTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCG 228694 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| |||||| || ||||| || || ||||| || ||||||||||| Sbjct 228695 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 228744 Score = 123 bits (136), Expect = 3e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||| |||| || ||||||||| ||||||||||| || Sbjct 228062 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTTTGGATATTGTAATCGGCG 228121 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| |||||||| ||||| || || ||||| | || Sbjct 228122 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 228181 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || ||| |||||| ||| | || | |||| ||| | | | |||||| || || | Sbjct 228182 ATGCCCTCTTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 228239 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||| || ||||| || || ||||| || ||||| ||||| Sbjct 228240 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 228288 >seq115 Length=605796 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || ||| ||||| || ||||| || |||| || || | || || Sbjct 306285 CACCAAGTGGAGAGTCGACTCTTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTC 306226 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || ||||| ||||| || |||||||| | || | || |||||||| Sbjct 306225 GAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTG 306166 Query 42119 GATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | ||||||| ||| || || |||| |||||||| | Sbjct 306165 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCT 306107 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 ||||||| || ||||| ||||||||||||| Sbjct 306106 TGCCCGTGAGGGTCTTGACAAAGATTTGCA 306077 >seq82 Length=702097 Score = 116 bits (128), Expect = 4e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||||||| || ||||| || |||| || || | || || Sbjct 522792 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCG 522851 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || || ||||| || |||||||| | || | || |||||||| | Sbjct 522852 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 522911 Query 42120 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || || |||| ||| | | | ||||||| ||| || || |||| ||||| || || Sbjct 522912 ATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTT 522970 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGC 42206 |||||| || ||||| |||||||||||| Sbjct 522971 GCCCGTAAGAGTCTTGACAAAGATTTGC 522998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211285794320