Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq107 170 2e-37 seq66 134 2e-26 seq135 98.7 1e-15 seq111 89.7 6e-13 >seq107 Length=347312 Score = 170 bits (188), Expect = 2e-37 Identities = 596/924 (65%), Gaps = 15/924 (2%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || ||||| ||||| || || ||| ||| | | |||||| | || || Sbjct 18120 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGTGCCGAGTACTCGATGATCTCG 18061 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||||||| || ||| |||||||| | ||||||||||| || ||||| Sbjct 18060 GTGCACAAGTTCGACGACTTGATCGTCCCAAGGTTCTTTTGGTTTGATTTCTTGTTCGCG 18001 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||||||| |||| | || || || ||| | || ||||||||| | | Sbjct 18000 GCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAGAATTGCGTAC 17941 Query 106643 CACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 || | | | || || || | | ||||| || |||||| ||||| || | | Sbjct 17940 CAAAGCTTTTGC-GCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 17882 Query 106702 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 106761 | ||| ||||| || || | ||| ||| || || || | | | || ||||| Sbjct 17881 CAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAA 17822 Query 106762 AAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 106821 |||| ||| | || | |||| || |||| |||||| || || |||||||| || | Sbjct 17821 GAGAGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGCGC 17762 Query 106822 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 106881 | |||||||| | | || | || || | || || || || | || ||||| Sbjct 17761 AAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGAAGGTCCAGGAA 17702 Query 106882 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 106939 ||| | || || |||||||| ||||| || |||| |||| | ||| ||||| Sbjct 17701 CTCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCTT 17645 Query 106940 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 ||| |||| | || |||||||| ||| ||| | || || ||||| || | || Sbjct 17644 GTTGCCACCTTGGTCGACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGGACGAT 17585 Query 106996 ACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGG 107053 || | || | || || || || ||| || ||| | || | | | ||| Sbjct 17584 GCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAG--CCGGTTGCGCGGATGTTGTGG 17527 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 107113 ||| || || ||||| || || ||| ||||| |||| ||| | | || || | Sbjct 17526 ATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCG 17467 Query 107114 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 107173 || || || | || || || ||||| | | || ||||| || || | |||||| Sbjct 17466 TAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGG 17407 Query 107174 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATC 107233 || || || || |||||||| || || | ||||| | || | | |||||| Sbjct 17406 TGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATG 17347 Query 107234 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGC 107293 || ||| | || |||||| |||||||| | ||||||||||||| ||| |||||| Sbjct 17346 AGGTTGTAAGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGC 17287 Query 107294 ATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTC 107353 || | ||||| || || ||| || |||| |||| || | | ||| | Sbjct 17286 ATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGC 17227 Query 107354 TCAAGGGTTTTGAGACCAAAGTAA 107377 || || ||||||| ||||||||| Sbjct 17226 TCGAGCGTTTTGAAGCCAAAGTAA 17203 >seq66 Length=711016 Score = 134 bits (148), Expect = 2e-26 Identities = 283/417 (68%), Gaps = 4/417 (1%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| | || |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 647118 CCGCTTTTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 647059 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||| ||||| || ||| ||||||||| | ||| | || || Sbjct 647058 CGAGACGACGCCCTTTTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 646999 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | | ||||| || ||||||||| | ||||| ||| |||||| ||| ||| | ||||| Sbjct 646998 GATTGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 646939 Query 7079 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATC 7136 ||| || || ||| | || ||| ||| ||||||||| | |||||| | ||||| | || Sbjct 646938 CCACGAGTCCCCGCGTCGTGGTCGCAC-CTTTGTCACGAGGAAGATCTCCCGAGC-TGTC 646881 Query 7137 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 7196 | ||| | ||| || |||| | | | | | || || || | || || | Sbjct 646880 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGT 646821 Query 7197 GATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAA 7256 |||||||| ||||| ||||| || || | |||||| ||| | || ||||| | Sbjct 646820 GATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGCAAGACAAG 646761 Query 7257 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTGAGGCGGTTCATTGAG 7313 ||||||| | ||| | || |||||||||||||| | || | | |||| ||||| Sbjct 646760 CCCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCTGTCAAGGAGTTCGTTGAG 646704 >seq135 Length=558922 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 6899 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 6958 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 259721 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 259662 Query 6959 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 7018 |||| ||| ||||||||||| || ||| || |||||| | ||| | || || Sbjct 259661 CGAGACGACCCCCTTCTACCCTCGTTCGCCTTATGGAGTCGCCAAGTTGTACGCCTTCTG 259602 Query 7019 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 7078 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 259601 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 259542 Query 7079 CCATGAATCACC 7090 ||| || || || Sbjct 259541 CCACGAGTCCCC 259530 >seq111 Length=630077 Score = 89.7 bits (98), Expect = 6e-13 Identities = 237/355 (67%), Gaps = 14/355 (4%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| ||||||||||| || || ||||| | ||| ||| | ||| ||||| || || Sbjct 136049 GATCAGACCCTTGATATGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGCTTGCC 136108 Query 169238 ATAGCGAAGTTCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTT 169297 || || || || || ||| |||| || || || ||||||||||||| ||| Sbjct 136109 GTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTT 136168 Query 169298 GAGATCG-TTGAACTCTTGG----TTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACA 169352 ||||| ||||| ||| || | || | | ||| ||| | | || || || || Sbjct 136169 --GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGC--CCGCCGCTTCACGCACG 136223 Query 169353 TTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGA 169412 || |||| || || | ||| ||||| ||||||| || || || ||||| | ||| Sbjct 136224 TTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCCAGA 136283 Query 169413 CCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTT--TC 169470 |||| ||| || || | || || ||||| || || || | ||||| || ||||| | Sbjct 136284 CCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTGGAC 136343 Query 169471 CAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACCAGTAAT 169525 | | | | |||||| || ||||| || || || | |||| || ||| || || Sbjct 136344 CCG--TTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTGACAAGACCCGTGAT 136396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979155428520