Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq46 98.7 8e-16 seq120 89.7 4e-13 >seq46 Length=591722 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || ||||| ||| || || || |||||||| | || | || Sbjct 538931 AGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGG 538990 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || |||| ||| ||||| || | ||||| ||||||| Sbjct 538991 CCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCC 539050 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || |||| ||| ||||| | ||| Sbjct 539051 TTGTCCTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTG 539110 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||| | || || || || ||||||||| Sbjct 539111 ATGGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCATC 539149 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || ||||| ||| || || || |||||||| | || | || Sbjct 538703 AGACGCAACACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGG 538762 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || |||| ||| ||||| || | ||||| ||||||| Sbjct 538763 CCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCC 538822 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || |||| ||| ||||| | ||| Sbjct 538823 TTGTCCTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGCGTG 538882 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | || || || || || ||||| Sbjct 538883 ATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 538920 >seq120 Length=764448 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | |||||| || ||||| ||| ||||| ||||||||||| | Sbjct 228062 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTTTGGATATTGTAATCGGCG 228121 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || || || || || || ||||| || | |||| Sbjct 228122 AGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGA 228181 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| ||||| |||||| || || | | | || || | ||| ||| Sbjct 228182 ATGCCCTCTTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 228241 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| ||||| || || |||| || || || || |||||||| Sbjct 228242 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 228288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936564683029