Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq107 226 3e-53 seq135 102 1e-15 seq61 102 1e-15 seq120 96.9 4e-14 seq108 93.3 5e-13 >seq107 Length=347312 Score = 226 bits (250), Expect = 3e-53 Identities = 335/471 (71%), Gaps = 19/471 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||||||||||||||||| ||| |||| ||||||||||| |||| |||||| || Sbjct 17634 TGGTCGACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 17575 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||||| ||||| | ||||| | || ||| Sbjct 17574 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTTGCGCGGATGTTGTGGATGCTCAAACCG 17515 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||| ||||| || Sbjct 17514 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAAATGCCTTCA 17455 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || || ||||| |||||||| | ||| ||| Sbjct 17454 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 17395 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGT-AGGT 1630364 |||||||||||||| |||| || ||| || | || |||||| || || || Sbjct 17394 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTAAGAC 17335 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 17334 TGCAAG-ACGCGC------------TCAATGTCGTGA---CCGTGGATGCCGACGGCGAC 17291 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| |||| |||| || | | || ||||| Sbjct 17290 ACGCATGAGCATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 17232 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| ||||||||| || | ||||||||||||| Sbjct 17231 AGCGCTCGAGCGTTTTGAAGCCAAAGTAATTGTAGCCGAAATCGCGGTCGT 17181 Score = 125 bits (138), Expect = 9e-23 Identities = 286/439 (65%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || |||||||||||||| ||| | |||| | |||| || ||||||| ||||| | Sbjct 18074 ACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTCCCAAGGTTCTTTTGGTTTG 18015 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 || ||| |||||||||||| ||||||| |||| ||| || |||| ||| ||| Sbjct 18014 ATTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCT 17955 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNN 1628341 ||| || || |||| | || ||||||| | || |||||||||| Sbjct 17954 CGAGAATTGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTT 17895 Query 1628342 NNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCT 1628401 || | |||| ||| ||||| |||||||| || | Sbjct 17894 CGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTT 17835 Query 1628402 CGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCAC 1628461 ||| || || ||||| | ||| ||||| ||| | | | || ||| ||||| || Sbjct 17834 CGGCGGGGCAGAAGAGAGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGG 17775 Query 1628462 ACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 1628521 |||| || || | ||||| || || || ||| |||||||||||||| ||||| Sbjct 17774 GAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGATTCTTGC 17715 Query 1628522 TGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 1628581 ||||| || | || | | ||| |||||||||||||| |||||| || ||||| | Sbjct 17714 GAAGGTCCAGGAACTCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 17655 Query 1628582 CCTTGCGCTTGCCGCCGCC 1628600 | |||||| ||| || Sbjct 17654 CGGGACGCTTGTTGCCACC 17636 Score = 120 bits (132), Expect = 4e-21 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| | ||||||| |||||||| || Sbjct 19235 TGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATACCC 19176 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||||| | Sbjct 19175 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGCCATCGTCGGG 19116 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||||| ||| | |||||||||| Sbjct 19115 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGATCGGCCGA 19057 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 19056 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 18998 Query 1627220 CG 1627221 || Sbjct 18997 CG 18996 >seq135 Length=558922 Score = 102 bits (112), Expect = 1e-15 Identities = 126/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 869704 GAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGAC 869763 ||| || || ||| ||||||| |||||||||||| |||||||||||| || ||||| Sbjct 87996 GAATCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 87937 Query 869764 GTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTGGACGGTGTCGGC 869820 |||| ||| |||| |||||||||| ||||| |||||| | |||| Sbjct 87936 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTT 87877 Query 869821 GCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | | ||||| ||| ||||||||||| | || ||||||||||| |||||| Sbjct 87876 GGACAAGTCCATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 87825 >seq61 Length=200753 Score = 102 bits (112), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 54418 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 54359 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||| | |||| || ||| || || || ||| || ||||||| || | Sbjct 54358 TGGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGCACGCTTCGATGGCGATGCGCTCAA 54302 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| || || || ||||| Sbjct 54301 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAAATACCGGTGTCGG 54242 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 54241 GGTGGACTTGCTTCAACACCTTG 54219 >seq120 Length=764448 Score = 96.9 bits (106), Expect = 4e-14 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 472143 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 472202 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || || | ||||||||||||||||||||||| || |||||||| Sbjct 472203 -TTCGACAAGCTGGAAGCTCTTTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 472261 Query 19172 ATTCGAGATTGG 19183 || |||||||| Sbjct 472262 CTTTGAGATTGG 472273 Score = 91.5 bits (100), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| || | | || || || || | Sbjct 374981 TCGACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGG 374922 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| | Sbjct 374921 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAG 374862 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 374861 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 374802 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | | |||||||| | | || ||||| |||||||| Sbjct 374801 AGAGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCAT 374759 >seq108 Length=1268086 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | |||||||||||||||| || Sbjct 165414 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAAGTCTGGATCTCGCGCGACGTGA 165355 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| | ||||| || | |||||| | |||||| || | Sbjct 165354 TCGTCGCCTTGTGGTTGT---ATTGCGCGAGCTTGGACGCCTCGAGGGTGATGCGCTCAA 165298 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||| | Sbjct 165297 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCCG 165238 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||| | | ||| ||| Sbjct 165237 GGTGAACCTGCCTCAACACTTTG 165215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107120899575691