Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq107 192 9e-43 seq135 122 1e-21 seq61 118 2e-20 seq108 113 7e-19 seq111 111 2e-18 seq120 86.0 1e-10 >seq107 Length=347312 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| ||||||||||||| ||| |||| ||||||||||| || | |||||| || Sbjct 17634 TGGTCGACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 17575 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 17574 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTTGCGCGGATGTTGTGGATGCTCAAACCG 17515 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||| ||||| || Sbjct 17514 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAAATGCCTTCA 17455 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 17454 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 17395 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 17394 GCGTTGAAGAGCGTCGGCG 17376 Score = 141 bits (156), Expect = 1e-27 Identities = 291/439 (66%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||||| ||| | |||| | | || || ||||||| ||||| Sbjct 18074 ACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTCCCAAGGTTCTTTTGGTTTG 18015 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 || ||| |||||||||||| |||||| |||| || || |||| ||| ||| Sbjct 18014 ATTTCTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCT 17955 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || || || |||||| | ||||||| | || || | |||||||||| Sbjct 17954 CGAGAATTGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTT 17895 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | | |||| || | |||| | | ||||| |||||||| || | Sbjct 17894 CGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTT 17835 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||||| ||||| | ||| |||||| | | | | || || ||| || || ||| Sbjct 17834 CGGCGGGGCAGAAGAGAGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGG 17775 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||| || | | |||||||| || || ||| |||||||||||||| ||||| Sbjct 17774 GAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGATTCTTGC 17715 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 ||||| || | || | || ||| |||||||||||||| |||||| || ||||| | Sbjct 17714 GAAGGTCCAGGAACTCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 17655 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | |||||| ||| || Sbjct 17654 CGGGACGCTTGTTGCCACC 17636 Score = 111 bits (122), Expect = 2e-18 Identities = 174/242 (72%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | |||| | || ||||||| |||||||| || Sbjct 19235 TGGTCGACGGTGAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATACCC 19176 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| ||||| |||||||||||||| | || ||| ||| Sbjct 19175 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GCTGCGCCATCGTCG 19118 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||||| ||| | || |||||| Sbjct 19117 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGATCGGCC 19059 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || ||||| | | | ||| || | |||||| ||||||||| | | ||||||||| Sbjct 19058 GACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 19000 Query 2069487 AT 2069488 || Sbjct 18999 AT 18998 >seq135 Length=558922 Score = 122 bits (134), Expect = 1e-21 Identities = 146/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 88022 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 87963 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 87962 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 87903 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | |||| | | ||| | ||| ||||||||||||||||| Sbjct 87902 TTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAAAAGGAT 87843 Query 796327 GCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 87842 GCCTCGGCCTTCTTGTAC 87825 >seq61 Length=200753 Score = 118 bits (130), Expect = 2e-20 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 54442 CCTTCGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 54383 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||| | |||| || ||| || || Sbjct 54382 AGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGC 54326 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 || ||| || ||||||| || | ||||||||||| |||||||| | |||| ||||| Sbjct 54325 ACGCTTCGATGGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 54266 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| || || || ||||||||| || ||||| | ||||||| Sbjct 54265 CCTTGTTCGAAATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 54219 >seq108 Length=1268086 Score = 113 bits (124), Expect = 7e-19 Identities = 163/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 165438 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCG 165379 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 |||||||||||||| | |||||| ||| | |||| | |||||| || | Sbjct 165378 AAGTCTGGATCTCGCGCGACGTGATCGTCGCCTTGTGGTTGT-ATTGCGCG--AGCTTGG 165322 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | |||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 165321 ACGCCTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 165262 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||| ||||| |||||| | | ||| ||| Sbjct 165261 CCTTGTTCGAGATACCCGTGTCCGGGTGAACCTGCCTCAACACTTTG 165215 >seq111 Length=630077 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCAG 796198 ||| ||||| ||||||| | || ||||| ||| | ||| | | ||| ||||||| Sbjct 393208 AAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGA-GAACCTCTCAACCAAGTTCTCAT 393150 Query 796199 CCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGT 796258 ||||| || || |||||||| |||||||| ||||| |||||||| || |||| Sbjct 393149 TCACGACCCCATCTGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGT 393090 Query 796259 CGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 393089 CGTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGCTGCCGAGGTCGATCTCTTCGGCGG 393030 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 393029 ACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 392989 >seq120 Length=764448 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 374979 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGGGT 374920 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | |||||||||| || ||||| | | || ||| |||||||| || Sbjct 374919 CGCCACAAGCTCGTCATCCTCGACGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAGCG 374860 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 ||||| ||| ||||||| | | ||||||| || || || || | || |||||| | Sbjct 374859 CTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACCAG 374800 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | || Sbjct 374799 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 374740 Query 2019387 ACCGACGCCCAG 2019398 ||||| ||| || Sbjct 374739 ACCGATGCCGAG 374728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916222678472897