Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12-
23] 223 sequences; 35,405,415 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq120 109 4e-19
seq46 109 4e-19
>seq120
Length=764448
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||| || ||||| || || || |||||||| ||||| || | |||||
Sbjct 228301 ACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCC 228360
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || |||||||| | || | | ||| || || || ||||| ||||||||
Sbjct 228361 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCTTT 228420
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | ||||| | || | ||||| || || || || || || |
Sbjct 228421 GTCCTG-AATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 228479
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || | ||| || || || ||||||||
Sbjct 228480 TCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 228516
Score = 105 bits (116), Expect = 5e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||| || ||||| || || || |||||||| ||||| || | |||||
Sbjct 228529 ACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGCGAGCGTGCGGCC 228588
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || |||||||| | || | | ||| || || || ||||| ||||||||
Sbjct 228589 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCTTT 228648
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | ||||| | || | ||||| || || || || || || |
Sbjct 228649 GTCCTG-AATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGA 228707
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || | ||| || || || || |||||
Sbjct 228708 TCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 228744
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
||||| || | | ||| |||||||| || ||||| || || ||||| || || |||||
Sbjct 228059 TGTCCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTTTGGATATTGTAATCG 228118
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
|| | ||||| ||| || || || |||||||| | || | | ||| || || ||
Sbjct 228119 GCGAGCGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGG 228178
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735
||||| ||||||||||| || ||| || | ||||| | || | ||||| || ||
Sbjct 228179 GGAATGCCCTCTTTGTCCTG-AATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTC 228237
Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || ||||| || | ||| || || || ||||||||
Sbjct 228238 GACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 228288
>seq46
Length=591722
Score = 109 bits (120), Expect = 4e-19
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||||||||| || ||||| || || || || ||||| |||||||| | |||||
Sbjct 538477 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCC 538536
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| ||||| || |||||||| | || | | ||| || || || ||||| ||||| ||
Sbjct 538537 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTT 538596
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| || || || ||||| | || | ||||| || ||| || || || || |
Sbjct 538597 GTCTTG-GATCTTGGTCTTGACGTTGTCAATCGTGTCCGAGGATTCGACCTCGAGCGTGA 538655
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || | || || || || || |||||
Sbjct 538656 TCGTCTTGCCCGTAAGCGTCTTGACGAAAATTTGCAT 538692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385218153046443
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |