Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq107 210 3e-48 seq135 111 2e-18 seq61 98.7 1e-14 seq108 91.5 2e-12 seq120 86.0 9e-11 >seq107 Length=347312 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| |||||| || || ||| | Sbjct 17376 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCA 17435 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||||| |||||||| || ||||| || |||||||||||| |||||||||||||| Sbjct 17436 CGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCT 17495 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | ||||| || |||||||| | ||||| | ||||| | ||| ||||| Sbjct 17496 CCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCAACCGGCTCCTACA 17555 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| | || |||||||| || || | ||| ||| Sbjct 17556 TCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACA 17615 Query 260163 CGGCGCGCTACGTCGACCA 260181 ||||||||||||||||||| Sbjct 17616 CGGCGCGCTACGTCGACCA 17634 Score = 102 bits (112), Expect = 1e-15 Identities = 286/445 (64%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||| ||| || Sbjct 17636 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTC 17695 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | |||||||| ||||| |||||||| |||| ||| |||| || Sbjct 17696 TTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAA-GGAG-----GAAGTCCGCGCTCGT 17749 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| || || ||| || | | | ||| | || Sbjct 17750 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGC 17809 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| |||| || |||||||| |||||| |||||||| | Sbjct 17810 GAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAG 17869 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || |||| | | ||| | || | ||||| Sbjct 17870 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCG 17929 Query 262088 CGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTC 262147 | | || | |||| || ||| ||| |||||| |||| || |||| |||| |||| || Sbjct 17930 CAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCTC 17989 Query 262148 TACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207 ||||||||||||| ||| || ||||| ||||||| || || | | | | Sbjct 17990 TACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATCAAGTCGTCG 18049 Query 262208 AACCTGTGCACCGAGATCGTCCAGT 262232 ||| |||||||||||||| || ||| Sbjct 18050 AACTTGTGCACCGAGATCATCGAGT 18074 Score = 96.9 bits (106), Expect = 5e-14 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 18996 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 19054 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| |||||||| || ||||||||| | || | | || Sbjct 19055 TGTCGGCCGATCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 19113 Query 263291 A-CCCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | ||||||| | | ||| |||||||||||||| ||| | ||| || || || || Sbjct 19114 AGCCCGACGATGGCGCAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 19172 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| || |||||||| ||||||| || |||| | | || || | ||||||||||| Sbjct 19173 GACGGGTATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCGATCAAGTTCACCGTCGA 19232 Query 263409 TCA 263411 || Sbjct 19233 CCA 19235 >seq135 Length=558922 Score = 111 bits (122), Expect = 2e-18 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 87813 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 87871 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 87872 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 87931 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| || Sbjct 87932 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 87990 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 87991 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 88047 >seq61 Length=200753 Score = 98.7 bits (108), Expect = 1e-14 Identities = 160/228 (70%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | || || |||||| | ||| Sbjct 54219 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATT-TCGAACAAGGCGATGCT 54272 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||||||||| | || ||||||| || ||| || | || Sbjct 54273 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCATCGAAGCGTGCAAGCT 54332 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGCG 725092 ||| || |||| | ||| ||| | | || ||||||||||||||| | || || Sbjct 54333 CGCGACCTACAACCA---CAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCCG 54389 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 54390 ATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 54437 >seq108 Length=1268086 Score = 91.5 bits (100), Expect = 2e-12 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| | || |||||| Sbjct 165251 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCAC 165310 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCA-ACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| ||| | || ||| | | |||| | ||| |||||| |||||| Sbjct 165311 CCTCGAGGC--GTC--CAAGCTCGCGCAATACAACCACAAGGCGACGATCACGTCGCGCG 165366 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 |||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 165367 AGATCCAGACTTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 165426 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 165427 AAGGCACCA 165435 >seq120 Length=764448 Score = 86.0 bits (94), Expect = 9e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 332878 CAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG-TTGCAGGCCA 332936 || |||||| || || ||||| | | |||||||| | ||| | || ||||| || | Sbjct 374755 CAAGATGGCGCATCGACTCTGAATCGGCTCGATGATC-TTGTTGCTCTGGTTGCACGCAA 374813 Query 332937 GGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCCG 332996 ||| || || || || |||| ||||||| ||| ||||| || || ||||| Sbjct 374814 AGGCGAAGCGAGTGGTGTTGGAGAAGATTTCCATCGTCCTGCGGAGCGCTTGCTGGGCTC 374873 Query 332997 CCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAGAT 333056 |||| || | | ||||| ||||||||||||| || ||||||||| || | || || Sbjct 374874 CCGGGGTCATCGAATCGGCTTCGTCGAGGATGACGAGCTTGTGGCGACCCGGTGGGAGTG 374933 Query 333057 CAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 ||| ||||| |||| |||||| ||||| |||||||| Sbjct 374934 TGACCTTTTTCTGGGCGAAAGCCTTGATGCGGTTGCGTACGACGTC 374979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177789691240126