Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq66 145 9e-30 seq111 127 2e-24 seq107 127 2e-24 seq135 102 1e-16 >seq66 Length=711016 Score = 145 bits (160), Expect = 9e-30 Identities = 285/416 (69%), Gaps = 4/416 (1%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| ||||| ||| ||| || || ||| || || || ||| | Sbjct 647117 CGCTTTTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 647058 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||| ||||| || ||| ||||||||| | ||| | || ||| Sbjct 647057 GAGACGACGCCCTTTTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTGG 646998 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 | ||||| || ||||||||| | ||||| ||| |||||| ||| ||| | |||||| Sbjct 646997 ATTGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAAC 646938 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7469 || || || ||| | || ||| ||| ||||||||| | |||||| | |||| | | || Sbjct 646937 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATCTCCCGA-GCTGTCG 646880 Query 7470 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAG 7529 | ||| | ||| || |||| | | | | | || || || | || | | | Sbjct 646879 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 646820 Query 7530 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 7589 ||||||| ||||| ||||| || || | ||||||| ||| | || ||||| | Sbjct 646819 ATTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGCAAGACAAGC 646760 Query 7590 CCGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTGAGGCGGTTCATTGAG 7645 ||||||| | ||| | || |||||||||||||| | || | | |||| ||||| Sbjct 646759 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCTGTCAAGGAGTTCGTTGAG 646704 >seq111 Length=630077 Score = 127 bits (140), Expect = 2e-24 Identities = 248/358 (69%), Gaps = 10/358 (3%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || ||||||||||| || || || |||| ||| ||| | |||||||||||| Sbjct 136044 TTGATGATCAGACCCTTGATATGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 136103 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 136104 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 136163 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCGCGA 169336 | ||||| ||| ||||| ||| || ||| | | || | || | | || || || Sbjct 136164 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 136220 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||||||||| |||| || ||||| ||||| | Sbjct 136221 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 136280 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| ||||| | ||| || || || || ||||| | ||||||||| || || Sbjct 136281 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 136340 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAAT 169512 || | | | |||||| || ||||||||||| || | ||| || ||| || || Sbjct 136341 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTCGAGCTTGACAAGACCCGTGAT 136396 >seq107 Length=347312 Score = 127 bits (140), Expect = 2e-24 Identities = 503/783 (64%), Gaps = 19/783 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| |||| || || || | |||||||| || Sbjct 17269 CCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 17328 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || | ||| || |||||| | | || | ||||| | || || ||||| Sbjct 17329 CTTGCAGTCTTACAACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTT 17388 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || || ||||| || | | ||||| || Sbjct 17389 CAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGA 17448 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || || || | || || | | ||| |||| ||||| ||| || || Sbjct 17449 TTCGATTGAAGGCATTTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 17508 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || || |||||| | | | || | ||| || ||| || || Sbjct 17509 TGGTATCGGTTTGAGCATCCACAACATCCGCGCAACCGG--CTCCTACATCGCCGGCACG 17566 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 17567 AACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACGGCGCGCTAC 17626 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| ||| | |||| |||| || ||||| ||| Sbjct 17627 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 17683 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | |||||||| || | || || || || | ||||| | ||| Sbjct 17684 CACGCTGACGTCTTTGAGTTCCTGGACCTTCGCAAGAATCACGGCAAGGAGGAAGTCCGC 17743 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || |||||||||| || ||||||||||| |||||||||||| || | || |||| Sbjct 17744 GCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGG 17801 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | ||| ||||||| || || | | | || || || ||| ||| | | | Sbjct 17802 CCGCCGGCGAGTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATG 17861 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | || ||||| ||| | | | || ||||| | || || || || | ||| Sbjct 17862 GCGAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGA 17921 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || || || | | | ||| | || |||||| || | || ||| ||||| | || Sbjct 17922 TCCCCGC-GCAAAAGCTTTGGTACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCC 17980 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||| ||||| |||||| ||| | || || |||||||| | || |||| Sbjct 17981 TTCATGCTCTACAAGGACGCCGCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATC 18040 Query 104990 AAG 104992 ||| Sbjct 18041 AAG 18043 >seq135 Length=558922 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || ||| || || || || | Sbjct 259720 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 259661 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| || |||||| | ||| | || ||| Sbjct 259660 GAGACGACCCCCTTCTACCCTCGTTCGCCTTATGGAGTCGCCAAGTTGTACGCCTTCTGG 259601 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 259600 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 259541 Query 7412 CATGAATCACC 7422 || || || || Sbjct 259540 CACGAGTCCCC 259530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259174160520