Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq107 324 2e-83 seq111 129 6e-25 >seq107 Length=347312 Score = 324 bits (358), Expect = 2e-83 Identities = 539/776 (69%), Gaps = 2/776 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||||||| ||||| ||| ||| || | ||| Sbjct 17283 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGTCTTGCAGTCTTACA 17342 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||||||| |||||| |||| || || |||||||| || ||| Sbjct 17343 ACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 17402 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| ||| |||||||| ||||||||||||| ||||| || |||| Sbjct 17403 CTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCA 17462 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 17463 TTTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 17522 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| || | |||| | ||| || ||||||||| | | | | Sbjct 17523 GCATCCACAACATCCGCGCAACCGGCTCCTACATCGCCGGCACGAACGGCTACTCGAACG 17582 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| |||||||||||| || |||||| |||| ||||| Sbjct 17583 GCATCGTCCCCATGCTCCGTGTCTACAACAACACGGCGCGCTACGTCGACCAAGGTGGCA 17642 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||| ||| | | |||| Sbjct 17643 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCTGACGTCTTTGAGT 17702 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || |||||| || | || || | ||| ||||| || || | Sbjct 17703 TCCTGGACCTTCGCAAGAATCACGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTCTTTG 17762 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || ||||||||| | || ||| | || |||||| || Sbjct 17763 CGCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGCGAGTGGCCTCTCT 17822 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| ||| |||||||||||| | ||||| || || ||||| || ||| Sbjct 17823 TCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAGTTCCGCGCCTTGT 17882 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||| | | || |||| || | ||| Sbjct 17883 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGATCCCCGCGCAAAAGCTTTGG 17941 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | ||||| ||| || |||||| || || || | || | |||| ||||||||| | Sbjct 17942 TACGCAATTCTCGAGGCCCAGGTCGAAACTGGCAACCCCTTCATGCTCTACAAGGACGCC 18001 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 | ||| |||| ||||| |||||| | || ||||| ||| ||||| || Sbjct 18002 GCGAACAAGAAATCAAACCAAAAGAACCTTGGGACGATCAAGTCGTCGAACTTGTG 18057 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || || || Sbjct 18999 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTC 19058 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || ||||| ||||| | |||||||||||| || || || |||||| | || || || Sbjct 19059 GGCCGATCGAGGTGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 19118 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 19119 GACGATGGCGCAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGG 19178 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 ||||||||| |||| || |||||| Sbjct 19179 TATGTACTACTTGCGCACGCGCGCC 19203 >seq111 Length=630077 Score = 129 bits (142), Expect = 6e-25 Identities = 287/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 135163 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 135222 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||| || ||||| | | ||||| | ||| | ||||| | Sbjct 135223 AAGACGGCTCGATGCTTTGGCCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 135282 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | || |||||||||||| | |||| | Sbjct 135283 GATGGAAGACGCTACGCGTGAT-GGA-TGATACATTCGTGAAGATGTAAC--GAGCCGAA 135338 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 135339 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 135398 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | || ||||| |||| |||| | Sbjct 135399 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATT 135458 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 135459 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCTCCCAATTGTCCGACCTTGATC 135518 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| || ||||| || || | | |||||||| || ||||| || Sbjct 135519 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCCGGTTTGAAC 135578 Query 152290 CCGTC 152294 || || Sbjct 135579 CCATC 135583 Score = 102 bits (112), Expect = 9e-17 Identities = 182/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 135318 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 135377 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || Sbjct 135378 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATG 135437 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 135438 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCT 135497 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 135498 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 135557 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| || || | ||||| Sbjct 135558 TTGCGTTGACCCGGTTTGAACCCATC 135583 Score = 82.4 bits (90), Expect = 8e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 137336 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 137395 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCA 119190 |||||||| ||| | || ||| |||||||| | || |||||||| Sbjct 137396 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCA 137443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214474635400