Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12-
23] 223 sequences; 35,405,415 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq120 107 1e-18
seq115 107 1e-18
seq82 104 2e-17
seq46 102 6e-17
>seq120
Length=764448
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || |||||||| ||||| || || ||| ||
Sbjct 228516 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 228457
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| |||||||| || | || ||||| |||
Sbjct 228456 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 228397
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || || || ||||| || || || || | ||||| | | ||||||||||
Sbjct 228396 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 228337
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 228336 ATTCAGAAGGAGTCGAC 228320
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || || || |||||||| ||||| || || ||| ||
Sbjct 228744 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 228685
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || ||| |||||||| || | || ||||| |||
Sbjct 228684 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 228625
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || || || ||||| || || || || | ||||| | | ||||||||||
Sbjct 228624 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 228565
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 228564 ATTCAGAAGGAGTCGAC 228548
>seq115
Length=605796
Score = 107 bits (118), Expect = 1e-18
Identities = 147/203 (72%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665
||| | |||| || || || || ||||||||||| || || ||||| ||||| || || |
Sbjct 306071 TTACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 306130
Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
| | ||||| | || || | || || || | | ||||| ||||| | ||||||
Sbjct 306131 CGTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCA 306189
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
|| || || ||| | || || |||||||| || || || || | ||||| || | |||
Sbjct 306190 GACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGAC 306249
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
|||||||| ||||||||||| ||
Sbjct 306250 TACAACATCCAAAAAGAGTCGAC 306272
>seq82
Length=702097
Score = 104 bits (114), Expect = 2e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672
||| || || || || || || ||||| || |||||||| ||||| || || || | ||
Sbjct 522998 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 522939
Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731
||| | || || | || || || | | ||||| ||||| | |||||||| || |
Sbjct 522938 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 522880
Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791
| ||| | || ||||||||||| || || || || | ||||| || | ||| |||||||
Sbjct 522879 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 522820
Query 23792 TACAAAAAGAGTCCAC 23807
| ||||| ||||||||
Sbjct 522819 TCCAAAAGGAGTCCAC 522804
>seq46
Length=591722
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || || || ||||| || |||||||| ||||| || || ||| ||
Sbjct 538692 ATGCAAATTTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAATCCTCG 538633
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | | ||||| || || | || ||||| ||
Sbjct 538632 GACACGATTGACAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGACCA 538574
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 538573 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 538514
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 538513 CATCCAGAAGGAGTCGAC 538496
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| |||||||| || || ||||| || || ||||| ||||| || || || ||
Sbjct 539148 ATGCAGATCTTCGTTAAGACGCTTACGGGCAAGACCATCACGCTCGAGGTCGAGTCGTCG 539089
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 539088 GACACGATTGACAACGTCAAGACCAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGACCA 539030
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| || || || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 539029 ACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 538970
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 538969 CATCCAGAAGGAGTCGAC 538952
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || || ||||| || |||||||| ||||| || || || ||
Sbjct 538920 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 538861
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || | || || || | || ||||| || || | || ||||| ||
Sbjct 538860 GACACGATTGACAACGTCAAGACCAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGACCA 538802
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| || || || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 538801 ACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 538742
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 538741 CATCCAGAAGGAGTCGAC 538724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338008681353284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |