Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq120 159 8e-34 seq115 159 8e-34 seq82 154 4e-32 seq46 145 2e-29 >seq120 Length=764448 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || |||||||| |||||||| || ||| ||| Sbjct 228741 CAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 228682 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||||||||||||||| || || || || ||||| ||| Sbjct 228681 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAACAA 228622 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || |||||||| ||| | Sbjct 228621 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATT 228562 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 228561 CAGAAGGAGTCGACGCTGCA-CTTG 228538 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| |||||||| || ||| ||| Sbjct 228285 CAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 228226 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||||||||||||||| || || || || ||||| ||| Sbjct 228225 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAACAA 228166 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | || || |||||||| || || Sbjct 228165 CGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTCGCCGATTACAATATC 228106 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 228105 CAAAAGGAGTCGACGCTGCA-CTTG 228082 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| |||||||| || ||| ||| Sbjct 228513 CAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGAC 228454 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||||||||||||||| || || || || ||||| ||| Sbjct 228453 ACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAACAA 228394 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || |||||||| ||| | Sbjct 228393 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATT 228334 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 228333 CAGAAGGAGTCGACGCTGCA-CTTG 228310 >seq115 Length=605796 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || |||||||||||||| || || ||| Sbjct 306079 CAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 306138 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 306139 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAA 306198 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| ||||| | || | ||||| || ||| || Sbjct 306199 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACATC 306258 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || || || || |||| Sbjct 306259 CAAAAAGAGTCGACTCTCCA-CTTG 306282 >seq82 Length=702097 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || ||||||||||||||||| || || ||| Sbjct 522997 CAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGAC 522938 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| ||||| ||||| || ||||||||| Sbjct 522937 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCAA 522878 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || | ||||| || ||| || Sbjct 522877 CGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACATC 522818 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 522817 CAAAAGGAGTCCACCCTCCA-CTTG 522794 >seq46 Length=591722 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || |||||||| |||||||| ||| ||| ||| Sbjct 538689 CAAATTTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAATCCTCGGAC 538630 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| || ||||| || || || || || ||||| ||| Sbjct 538629 ACGATTGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAACAA 538570 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || || ||||| ||| || Sbjct 538569 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAACATC 538510 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 538509 CAGAAGGAGTCGACGCTCCA-CTTG 538486 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || |||||||| |||||||| || || ||| Sbjct 538917 CAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCGGAC 538858 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || || || || ||||| ||| Sbjct 538857 ACGATTGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 538798 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || || ||||| ||| || Sbjct 538797 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAACATC 538738 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 538737 CAGAAGGAGTCGACGCTTCACTTGGTGTTGCGTCTC 538702 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| |||||||| || || ||| Sbjct 539145 CAGATCTTCGTTAAGACGCTTACGGGCAAGACCATCACGCTCGAGGTCGAGTCGTCGGAC 539086 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || || || || ||||| ||| Sbjct 539085 ACGATTGACAACGTCAAGACCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAA 539026 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || |||||||| ||||| | || || || ||||| ||| || Sbjct 539025 CGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAACATC 538966 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 538965 CAGAAGGAGTCGACGCTCCACTTGGTGTTGCGTCTC 538930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727760714262