Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq46 288 9e-73 seq86 118 9e-22 seq136 113 4e-20 seq63 93.3 4e-14 >seq46 Length=827519 Score = 288 bits (318), Expect = 9e-73 Identities = 907/1395 (65%), Gaps = 46/1395 (3%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| |||| ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 799393 GAAGTGTACGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGATGCGGTCGGC 799452 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 799453 ATTGGCGCGCACACAAGCGAGTTGCGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 799512 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 799513 GACCAGTCCCACAGATCGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAACTCGCCC 799569 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| |||| | || Sbjct 799570 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCGGGGTCGGGCGGATTAGCGATG 799629 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 799630 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 799689 Query 22778 ATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | | | ||| | ||||| ||| ||||||| || || Sbjct 799690 ATTTGCTTGTTGAGCTTGCGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 799745 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 799746 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 799805 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 | |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 799806 CTGCGCCTCGATGACGGGATAGTAGTTAACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 799865 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | |||||||||| |||| || | | || || Sbjct 799866 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTAAGCGCCG--TTCTTGATGAAGCTC 799923 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 799924 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 799982 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | || | ||||| | ||||| Sbjct 799983 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTT 800041 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || |||||||||||| | || |||| || |||||||| | || | Sbjct 800042 TGTTCGCG-GCGTCTTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 800100 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTA 23250 ||||| ||| | | || ||| | | |||| | | | ||| || | ||||| Sbjct 800101 ATCGCGTACCAAAGTTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTA 800159 Query 23251 CTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT 23310 |||| | |||| ||| || || | || || ||| |||||||| | || || Sbjct 800160 TTTTTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTT-CAG 800218 Query 23311 CGGA-CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 ||| || | ||| |||| | | || || || |||||| ||||| || | Sbjct 800219 CGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATAAACAGATCGGGAA 800278 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| || || |||| || || || ||||| || ||||| ||||| |||||| | Sbjct 800279 TCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCATGGTTCTTGCGAA 800338 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 |||| || || || ||||| || ||||| ||||||||||| | || || || || | Sbjct 800339 GGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGG 800398 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| | Sbjct 800399 GACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGG 800458 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | |||| ||||| || |||| |||||| | || || | || || | || Sbjct 800459 GGACGATGCCGTTCGAGTAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGT 800518 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 |||| | | ||||| || || ||| | | || || || | |||||| || || | Sbjct 800519 TGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 800578 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 ||||||||||||| || || || || || ||| ||||| ||||||||| || | | Sbjct 800579 TGTCGTAGATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCT 800638 Query 23730 GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG 23789 ||| | ||||| |||| ||| |||||||| |||||| || ||||| | | | Sbjct 800639 GCGGGTGAGGCGTTCCGGCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAG 800698 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 |||| || ||||||| | | | || || ||||| | || || || || | ||||| Sbjct 800699 ACATGAGGTTGTACGATTGCAAGACGCGCTCGATGTCGTGACCATGGATGCCAACGGCGA 800758 Query 23850 CGCGCATCATCATGT 23864 | ||||| | ||||| Sbjct 800759 CACGCATGAGCATGT 800773 >seq86 Length=231977 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 67229 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 67170 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 67169 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 67111 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || ||| | ||||| Sbjct 67110 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATT 67051 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 67050 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 67014 >seq136 Length=1817790 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 239097 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 239038 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 239037 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 238979 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || ||| | |||||| ||| Sbjct 238978 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCCGATTACAAC 238919 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 238918 ATCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGTGCCAAGAAGCG 238860 >seq63 Length=1462319 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 870633 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCG 870692 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 870693 GACACGATTGACAACGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 870751 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || |||||||| ||| | || || || | |||||| || Sbjct 870752 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 870811 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 870812 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 870844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 625335 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 625394 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 625395 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 625454 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || |||||||||||| | || || || | |||||| ||| Sbjct 625455 CAACGACTGATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 625514 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 625515 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 625546 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 625563 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 625622 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 625623 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 625682 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || |||||||||||| | || || || | |||||| ||| Sbjct 625683 CAACGACTGATCTTTGCTGGCAAACAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 625742 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 625743 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 625774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 870177 ATGCAGATCTTCGTTAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCG 870236 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 870237 GACACGATTGACAACGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 870295 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || |||||||| ||| | || || || | |||||| || Sbjct 870296 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 870355 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||| || || |||| Sbjct 870356 CATCCAGAAGGAGTCGACGCTCCACTTGGT 870385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 870405 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCG 870464 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 870465 GACACGATTGACAACGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 870523 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || || |||||||| ||| | || || || | |||||| || Sbjct 870524 ACAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 870583 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||| || || |||| Sbjct 870584 CATCCAGAAGGAGTCGACGCTCCACTTGGT 870613 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 625107 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 625166 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| ||||| ||| | || || ||||| Sbjct 625167 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 625226 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || ||||| ||||| ||| | || || || | |||||| ||| Sbjct 625227 CAACGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 625286 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || |||| || Sbjct 625287 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCT 625318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765525183440