Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12-
23] 157 sequences; 32,762,276 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq46 123 3e-23
>seq46
Length=827519
Score = 123 bits (136), Expect = 3e-23
Identities = 419/647 (65%), Gaps = 12/647 (2%)
Strand=Plus/Plus
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
|||||| ||| | ||| || || | |||||| ||||| |||||||| || || | ||
Sbjct 800235 CCACTCGCCGGCGGCCTCGACACGCTCCATAAACAGATCGGGAATCCAGAGCGCAAAGAA 800294
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | |||||| || || ||||| ||| || |||||| | |
Sbjct 800295 GAGATCACGAGCGCGGACTTCCTCCTTGCCATGGTTCTTGCGAAGGTCCAGGAACTCGAA 800354
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| |||| ||||| || || | ||| || || | |||| || || ||||| || ||
Sbjct 800355 GACGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 800414
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
|| || | ||| | |||||||| || || || | | ||| || | || ||||| ||
Sbjct 800415 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 800474
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547
|| || || || | ||| ||| || | || || || || || | |||
Sbjct 800475 GTAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACC 800534
Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTT 63606
|| || || || | || ||||| | ||||| ||| || | |||||| ||||||||||
Sbjct 800535 GATACCACCGGCGGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCTT 800593
Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
| || |||||| |||| | | || ||||| || | || | ||| ||||
Sbjct 800594 CAATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTC 800653
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726
| ||||| || | || || || ||||| || || | ||||| | || |||||||
Sbjct 800654 CGGCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAGACATGAGGTTGTACG 800713
Query 63727 -TCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAA 63781
| ||| | | || || || |||| |||| || || ||||||||||| |
Sbjct 800714 ATTGCAAGA-CGCGCTCGATGTCGTGACCATGGATG----CCAACGGCGACACGCATGAG 800768
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
||||||||| || | ||| | | ||| || || | ||||||||| || |
Sbjct 800769 CATGTGCTGCGGGCGTTCGGCTACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAG 800828
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888
||||| || ||||| |||||||| || || || ||||| ||||
Sbjct 800829 CGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATAA 800875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816363982960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |