Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq63 141 2e-28 seq86 113 1e-19 seq136 95.1 3e-14 >seq63 Length=1462319 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||||| Sbjct 625561 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625502 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | ||||| || || |||||||| || ||||| |||||| Sbjct 625501 AGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGG---TCTGGG 625445 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || || || ||||| || || | || || || Sbjct 625444 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 625385 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 625384 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625335 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||||| Sbjct 625789 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625730 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | ||||| || || |||||||| || ||||| |||||| Sbjct 625729 AGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGG---TCTGGG 625673 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || || || ||||| || || | || || || Sbjct 625672 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 625613 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 625612 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625563 Score = 141 bits (156), Expect = 2e-28 Identities = 172/233 (74%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || ||||| | || || | |||| ||| || || ||||| || |||||| Sbjct 626020 TGTCCGCCTCGGAGACGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCG 625961 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||||||||| || || || | || || || || |||||||| || ||||| ||| Sbjct 625960 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGG---TCT 625904 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || |||||||| || || || ||||| || || | || || Sbjct 625903 GGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGAC 625844 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 625843 TCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625791 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || || |||||| Sbjct 625333 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625274 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || |||||||||| || ||||| |||||| Sbjct 625273 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGTTGG---TCTGGG 625217 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || || || ||||| || || | || || || Sbjct 625216 GGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 625157 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 625156 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 625107 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||||||||||||| || || || | || || || || ||| Sbjct 870595 TCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 870536 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || ||||| || || || || || | || ||| Sbjct 870535 ATCAATCGCTGTTGG---TCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACG 870479 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||| || || ||||| ||||||||||| || || || |||||| Sbjct 870478 TTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTG 870419 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 870418 ACGAAGATCTGCAT 870405 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | | || | || | ||| || || ||||| || || |||||| Sbjct 870403 CCACCGCGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870344 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || ||||||| |||||||| |||||| Sbjct 870343 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGG---TCTGGG 870287 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || || || | || ||||| || || | || ||| || Sbjct 870286 GGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCG 870227 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| || || || ||||| ||||| |||||||| Sbjct 870226 ACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870177 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||||||||||||| || || || | || || || || ||| Sbjct 870823 TCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 870764 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||||| |||||| || ||||| || || || || || | || ||| Sbjct 870763 ATCAATCGCTGTTGG---TCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACG 870707 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||| || || ||||| ||||||||||| || || || |||||| Sbjct 870706 TTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTG 870647 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 870646 ACGAAGATTTGCAT 870633 >seq86 Length=231977 Score = 113 bits (124), Expect = 1e-19 Identities = 141/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || || |||||||| ||||| || || || | || || || || ||| Sbjct 67035 TCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 67094 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || ||||| ||| ||||| || || ||||| || | || ||| Sbjct 67095 ATGAGACGTTGCTGG---TCTGGCGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACG 67151 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || || ||||| ||||||||||| || || ||||||||| Sbjct 67152 TTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTG 67211 Query 288460 ACGAATATCTGC 288471 || || || ||| Sbjct 67212 ACAAAGATTTGC 67223 >seq136 Length=1817790 Score = 95.1 bits (104), Expect = 3e-14 Identities = 711/1115 (64%), Gaps = 64/1115 (6%) Strand=Plus/Plus Query 325343 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGG--CAACAACCAGTTGATGT 325400 || |||||||| |||| | || ||| || || || | ||| | | || ||||| || Sbjct 1191860 TCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAAT--GTTGAGGT 1191917 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGC 325460 | ||| ||||| | | || || ||| | |||||| ||||||| | ||| | Sbjct 1191918 TGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATTTCAC 1191977 Query 325461 CATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGG 325520 | || || || || ||||| || |||||||||| || ||| | ||||| | || Sbjct 1191978 CGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATCTCCT 1192037 Query 325521 TCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 325578 |||||| ||||||||||| | | || | | || || |||||| |||||||| || Sbjct 1192038 GCGTCAACTTGCGCTTGAAGCAACCGA--ACAAGACCTTGCGTTGACCCGGTTTGAACCC 1192095 Query 325579 ATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTT 325638 ||||| ||| || ||||| || | ||| | |||||| | || | ||||| Sbjct 1192096 ATCAATGACAGAGGGAATAGAGCGCACGTTGTCGGCCATCGAGAAGAGGATCAACTCCTT 1192155 Query 325639 GTCGATGAAGT-CGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTT 325697 || |||||| | | || |||| || |||| | ||||||| || | | || || Sbjct 1192156 GTTGATGAAATCCTCGATCGGG-ACTTCGGCGATGCTGTGGTCGAGGTACGTGCCGGGGA 1192214 Query 325698 CGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAA----AGA 325749 || | ||| || | ||| |||||||| | ||||| || | ||||||||| | Sbjct 1192215 CG-AAGCC-TCGGAGCCATTCCTTGCGGTTGTCGGCCTTCTT--CTTGTTGAAGGCCATG 1192270 Query 325750 ACGGTCAAT--GAGCTC-TCCGGAATCGGAAGTCCACATAAACGTCTTCATGAGAGACTT 325806 || ||||| | |||| ||| | ||| | | | |||| || | || ||| Sbjct 1192271 TCGATCAATTCGCGCTCTTCCTGCGTCGAAGGGC----GGAACG---GCAAGCGATGCTT 1192323 Query 325807 ---CAGATTGCTGAAGTATTTTTTGGCATCTGCACTGG---AACTCGTACCAAGCCCCTT 325860 || |||| ||||| || || | | |||| ||||||||| | ||||| Sbjct 1192324 GTCCATGTTGCCAAAGTACTTAACCGCGT---CCCTGGCGTCACTCGTACCCAATCCCTT 1192380 Query 325861 AAAATACTTG----GTCGTCCATTTCTTCAT-ATCTTGTGTCTT-CACGAAGTCTTCGAA 325914 || |||||| | | |||| | ||| ||| || |||| | | | ||| | Sbjct 1192381 GAAGTACTTGATGCGCCATCCACGAC--CATCATC-GGTCTCTTCCTTCCATTGCTCGTA 1192437 Query 325915 GTCAGGAAGACTGAAAAATTCTCTGACTTCT--TTTCCCTTCCTGGCAACTACGATAGGC 325972 | ||||| |||||||| ||| || || ||||| | || ||||| || Sbjct 1192438 CTGAGGAATTGTGAAAAAT--GACAACTCCTTGTTCCCCTTGGTCGCCTTGACGATGGGG 1192495 Query 325973 GTGATGAACTTCTTCAAGAA-CCCTGGAATTTCTAGAAGATTAGGGAAACAGCTATGGAA 326031 ||||| |||| |||||| |||| | || || | |||||| ||| || || Sbjct 1192496 GTGATAAACTCGAGCAAGAAGCCCTTCAGCTT-GAGCAACGAAGGGAACCAGTAATCGAG 1192554 Query 326032 AAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCAT 326091 ||||| |||| ||||| ||||| | ||| || ||| |||| ||||||||| Sbjct 1192555 GAAGTTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCAT 1192614 Query 326092 CACATGACCGTAACGAAGCGAG--GACGTGTCTTTGTACACTTTACCGGTTTGAAGGCCG 326149 | | |||||||| |||||| ||| ||| |||| ||||| || || || || Sbjct 1192615 GAGCTTGCCGTAACGGAGCGAGTCGAC--GTCGGTGTAAACTTTGCCCTGCTGCAGACCC 1192672 Query 326150 AGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGA-TGCTTGCCACGGATGCATC 326208 | || || |||| |||| || || | || | || |||| | | | || || Sbjct 1192673 AAGATCTGCTTGATCGCTTGAATCTCGGCATTGTCGAGGAGGGCTTTGC-CCGCCGCTTC 1192731 Query 326209 GCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCAC 326268 || ||||| | | ||||| || | |||||| || ||||| | || |||||||| || Sbjct 1192732 ACGCACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGAC 1192791 Query 326269 GGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 326328 | ||| || | || || || | | |||||||| || || |||| ||||| ||||| Sbjct 1192792 AGCCAGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCA 1192851 Query 326329 CATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGAATTCCAGTCAC 326388 | | | ||| |||| ||||| | ||||| | ||| ||| | || || | Sbjct 1192852 CTTGGACCCGTTCCTCGTACCAGCGTTGTTCGCATCTTCGAGCTTGACGAGACCCGTGAT 1192911 Query 326389 TCG-GATCTTCTTGGTACCGTCGGTCTTCTTCAGC 326422 || |||| |||| ||||| |||||||| ||| Sbjct 1192912 ACGCGATC-GCTTGTGTCCGTCCGTCTTCTTGAGC 1192945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652027051446