Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq136 105 7e-18 seq86 100 3e-16 seq63 96.9 3e-15 >seq136 Length=1817790 Score = 105 bits (116), Expect = 7e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | ||||| || ||||| ||||||||||| || Sbjct 238871 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 238930 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || ||||||||||||||| | ||||| || |||||||| || || Sbjct 238931 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 238990 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || || ||| || || | || || | || || Sbjct 238991 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 239050 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAA 64448 || | || | ||||||||| || | || || || || ||||||| | ||| Sbjct 239051 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCACTGTAA 239103 >seq86 Length=231977 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||||||||| |||| ||||| | || || |||||||||||| Sbjct 67029 GTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCG 67088 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||| || |||||||| || || || ||||| || ||||| || || Sbjct 67089 GCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTT 67141 >seq63 Length=1462319 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| |||| ||||| | || Sbjct 870844 AGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 870785 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || | ||||| ||||| || ||||| ||||| || ||| Sbjct 870784 TCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT 870725 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || || ||| || || | || | ||| || || || || | || | | Sbjct 870724 TGAATCTTGGTCTTGACGTTGTCAATCGTGT--CCGACGACTCGACCTCGAGGGTGATCG 870667 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| || | || || ||||| |||||||| Sbjct 870666 TCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870633 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| |||| ||||| | || Sbjct 625318 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 625259 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || || ||||| || ||||| || || || || Sbjct 625258 TCGAGCTGCTTGCCCGCGAAGATCAATCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCC 625199 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || || || | || | ||| Sbjct 625198 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 625139 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 |||||||||| || || |||||||||||||| | || || Sbjct 625138 TTGCCGGTCAGGGTCTTGACGAAAATTTGCATCTGAAGAA 625099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| |||| ||||| | || Sbjct 625546 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 625487 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| | || || || || ||||| || ||||| || || || || Sbjct 625486 TCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCC 625427 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || || || | || | ||| Sbjct 625426 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 625367 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| |||||||| Sbjct 625366 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | || | |||||| || || || ||||||||||| |||| ||||| | || Sbjct 625774 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCC 625715 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| | || || || || ||||| || ||||| || || || || Sbjct 625714 TCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCC 625655 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || || || | || | ||| Sbjct 625654 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 625595 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| |||||||| Sbjct 625594 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| |||||| || || || |||||||| || |||| ||||| | || Sbjct 626002 AGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCC 625943 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || || || ||||| || ||||| || || || || Sbjct 625942 TCGAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCC 625883 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || | || || || | || | ||| Sbjct 625882 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTC 625823 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| |||||||| Sbjct 625822 TTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625791 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| || || || ||||||||||| |||| ||||| | || || ||||||||||| Sbjct 870374 CGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCC 870315 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | ||||| ||||| || ||||| ||||| || ||||| || || ||| Sbjct 870314 AGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGTCTT 870255 Query 64366 TACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || | || | ||| || || || || | || | |||||||| || | Sbjct 870254 GACGTTGTCAATCGTGT--CCGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGC 870197 Query 64424 GTTTTTACGAAAATTTGCAT 64443 || || ||||| || ||||| Sbjct 870196 GTCTTAACGAAGATCTGCAT 870177 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 64246 CGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCC 64305 |||||| || || || ||||||||||| |||| ||||| | || || ||||||||||| Sbjct 870602 CGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCC 870543 Query 64306 GGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTT 64365 ||| | || | ||||| ||||| || ||||| ||||| || ||||| || || ||| Sbjct 870542 AGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGTCTT 870483 Query 64366 TACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || | || | ||| || || || || | || | |||||||| || | Sbjct 870482 GACGTTGTCAATCGTGT--CCGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGC 870425 Query 64424 GTTTTTACGAAAATTTGCAT 64443 || || ||||| || ||||| Sbjct 870424 GTCTTGACGAAGATCTGCAT 870405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643819447080