Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq63 143 3e-29 seq94 96.9 3e-15 >seq63 Length=1462319 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 625333 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625274 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||||||| || || || || || Sbjct 625273 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGTTGGTCTGGGGGA 625214 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| ||||| ||| ||||||| |||||| Sbjct 625213 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAGGACTCGAC 625155 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || ||||| ||||| Sbjct 625154 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 625107 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | ||||||||||| || | ||| ||||| || || || ||||||||| | Sbjct 870403 CCACCGCGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870344 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || ||||| ||||||||||||| || || || || Sbjct 870343 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870284 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| || || ||||| |||| || | ||||||| |||||| Sbjct 870283 ATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGAC 870225 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||| ||||| || || || || || || |||||||| Sbjct 870224 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870177 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 625561 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625502 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| ||||| |||||| ||| || || || || || Sbjct 625501 AGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGA 625442 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| ||||| ||| ||||||| |||||| Sbjct 625441 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAGGACTCGAC 625383 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 625382 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625335 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| ||||| || || || ||||||||| | Sbjct 625789 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625730 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| ||||| |||||| ||| || || || || || Sbjct 625729 AGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGA 625670 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| ||||| ||| ||||||| |||||| Sbjct 625669 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAGGACTCGAC 625611 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 625610 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625563 Score = 138 bits (152), Expect = 1e-27 Identities = 174/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | |||||| || | ||| ||||| || || || ||||| Sbjct 626023 TACTG-TCCGCCTCGGAGACGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTA 625965 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| | | |||||| ||| || ||||| || ||||| |||||| ||| || || || Sbjct 625964 GTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTC 625905 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || ||||||||||||||| ||| || ||||| ||||| ||| ||||||| | Sbjct 625904 TGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT-CGATCGTGTCCGAAG 625846 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| |||| || | ||| ||||||||||| || || || || || ||||| Sbjct 625845 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625791 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||||||||| || | ||| ||||| || || || ||||||||| | | |||||| | Sbjct 870619 CGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCA 870560 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||||||||| || || || || ||||| |||||| Sbjct 870559 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTG 870500 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || || || ||||| |||| || | ||||||| |||||| |||| ||| | Sbjct 870499 TCTTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGACCTCGAGGGTGAT 870441 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || || || |||||||| Sbjct 870440 CGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 870405 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | ||| ||||| || || || ||||||||| | | |||||| | Sbjct 870847 CGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCA 870788 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||||||||| || || || || ||||| |||||| Sbjct 870787 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTG 870728 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 || || || ||||| |||| || | ||||||| |||||| |||| ||| | Sbjct 870727 TCTTGAATCTTGGTCTTGACGTTG-TCAATCGTGTCCGACGACTCGACCTCGAGGGTGAT 870669 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || || || || ||||| Sbjct 870668 CGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870633 >seq94 Length=1157722 Score = 96.9 bits (106), Expect = 3e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 47439 TACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCC-AAGATTTACCA 47497 |||||||| || ||||||||||| || | || | || | | ||| ||| | | | Sbjct 236387 TACATCGAGTTCGTCGCCGACCGATTGTTGGT-CGCCTTGGGCAACCCCAAGGTCTGGAA 236445 Query 47498 CACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 ||||||| || ||||| |||||||||| || ||||||||||||||||| |||||||| Sbjct 236446 AGCCGAGAACCCCTTCGACTTTATGAACATGATCTCGCTCGAGGGCAAGACAAACTTTTT 236505 Query 47558 CGAGAAGCGCGT 47569 ||||||||| || Sbjct 236506 CGAGAAGCGTGT 236517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499866829680