Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12-
23] 157 sequences; 32,762,276 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq136 100 2e-16
seq86 95.1 8e-15
seq63 91.5 1e-13
>seq136
Length=1817790
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || || || ||||| || || | || | || |||| ||
Sbjct 238890 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCG 238949
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || || |||||||||||| |||| | || ||||||||
Sbjct 238950 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 239009
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | |||| || | ||| || |||| ||| ||||| ||
Sbjct 239010 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 239069
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCA 34980
|||||||| ||||| |||||||| ||||
Sbjct 239070 CCCGTGAGGGTCTTGACAAAGATTTGCA 239097
>seq86
Length=231977
Score = 95.1 bits (104), Expect = 8e-15
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || || || ||||| || || | || | || |||| ||
Sbjct 67017 ACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTCG 67076
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || || |||||||||||| |||| | || ||||||||
Sbjct 67077 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGG 67136
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | |||| || | ||| || |||| ||| || || ||
Sbjct 67137 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 67196
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGC 34979
||||| |||||||| |||||||| |||
Sbjct 67197 CCCGTAAGAGTCTTGACAAAGATTTGC 67223
>seq63
Length=1462319
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| ||||| | || | || |||| ||
Sbjct 625999 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCG 625940
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || |||||||| |||||| | || | |||||||||||
Sbjct 625939 AGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 625880
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | |||| || | ||| || |||| || || || ||
Sbjct 625879 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTG 625820
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || || ||||| || ||||| ||||||
Sbjct 625819 CCGGTCAGGGTCTTGACGAAGATTTGCATA 625790
Score = 89.7 bits (98), Expect = 3e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||| | || || ||||| ||||| || || | || | || ||||
Sbjct 870617 CAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATC 870558
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| ||||| || || ||||| || | ||| || |||||| | || | || ||||||||
Sbjct 870557 CTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 870498
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
|||||| |||||| | |||| || | ||| || |||| ||| || ||
Sbjct 870497 TTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGT 870438
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| || ||||| || ||||||||||||
Sbjct 870437 CTTGCCCGTAAGCGTCTTGACGAAGATCTGCATA 870404
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||||||| | || || ||||| ||||| || || | || | || ||||
Sbjct 870389 CAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATC 870330
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| ||||| || || ||||| || | ||| || |||||| | || | || ||||||||
Sbjct 870329 CTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTC 870270
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948
|||||| |||||| | |||| || | ||| || |||| ||| || ||
Sbjct 870269 TTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGT 870210
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || ||||| || |||||||||||
Sbjct 870209 CTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324632978833896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |