Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq46 235 7e-56 seq75 102 1e-15 seq63 96.9 4e-14 >seq46 Length=827519 Score = 235 bits (260), Expect = 7e-56 Identities = 337/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 800416 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 800475 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| |||||||| | ||||| ||||| ||||| | ||||| | || ||| Sbjct 800476 TAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 800535 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| || Sbjct 800536 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 800595 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || |||||||| |||||||| | ||| ||| Sbjct 800596 ATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 800655 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 || |||||||| || |||| || |||||| | || |||||| || ||| | | Sbjct 800656 GCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAGACATGAGGTTGTACGAT 800715 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | |||| | ||| | |||||| Sbjct 800716 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCATGGATGCCAACGGCGAC 800759 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| | || |||| || | | || ||||| Sbjct 800760 ACGCATGAGCATGTGCTGCGGGCGTTCGGCTACCTTGCCGTCGATGCGAAG-CAAGTAGG 800818 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| |||||||||| || | ||||||||||||| Sbjct 800819 AGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 800869 Score = 125 bits (138), Expect = 9e-23 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 |||||||||||||||| ||| || || |||||| | ||||||| ||||||||||| Sbjct 798805 TGGTCGACGGTAAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 798864 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||| | | Sbjct 798865 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTTGGG 798924 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||||| ||| | |||||||||| Sbjct 798925 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCCGA 798983 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 798984 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 799042 Query 1627220 CG 1627221 || Sbjct 799043 CG 799044 Score = 111 bits (122), Expect = 2e-18 Identities = 291/450 (65%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||||||| | |||| | |||| || |||||| Sbjct 799966 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTC 800025 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | | ||| ||||||| |||| ||||||| |||| ||| || ||| Sbjct 800026 TTTTGGTTCGATTTTTTGTTCGCGGCGTCTTTGTAGAGCATGAAGGGGTTGCCAGTTTCG 800085 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 | ||| || | | || || |||| | | ||||||| | || | || ||||| Sbjct 800086 ACCTGGGCTTCAAGAATCGCGTACCAAAGTTTTTGCGCGGGGATCGTCT-TCTTGGCGCG 800144 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 ||||| || | |||| ||| ||||| || Sbjct 800145 GCCCTCCTTTTCGTATTTTTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAG 800204 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 |||||| || || | || || ||||| | ||| ||||| ||| | | | || ||| Sbjct 800205 GCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCAT 800264 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 ||| || || |||| || || | ||||| || || || ||| ||||||||||| Sbjct 800265 AAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 800324 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 |||||||| ||||| || | |||| | ||| |||||||| ||||| |||||| Sbjct 800325 ATGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 800384 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 800385 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 800414 >seq75 Length=1932057 Score = 102 bits (112), Expect = 1e-15 Identities = 151/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | ||||||||||||||||| | || Sbjct 284658 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAGGTCTGGATCTCGCGCGAGGAGA 284599 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| || ||| || | |||||| | ||| || |||| Sbjct 284598 TCGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGGAAGCCTCGAGGGAGATACGCTCGA 284542 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 284541 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCGG 284482 Query 1254520 GGTGCACCTGCTTGAGCACCT---TGTAGATG 1254548 |||| || ||||| | ||| | |||||||| Sbjct 284481 GGTGGACTTGCTTCAACACTTTGCTGTAGATG 284450 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 602625 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 602684 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||| | |||| || ||| || | || ||| | |||||| || | Sbjct 602685 TGGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGGACGCTTCGAGGGTGATGCGCTCAA 602741 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 602742 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 602801 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 602802 GGTGGACTTGCTTCAACACCTTG 602824 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1374506 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1374447 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||| | |||| || ||| || | || ||| | |||||| || | Sbjct 1374446 TGGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGGACGCTTCGAGGGTGATGCGCTCAA 1374390 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1374389 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1374330 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 1374329 GGTGGACTTGCTTCAACACCTTG 1374307 >seq63 Length=1462319 Score = 96.9 bits (106), Expect = 4e-14 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 377216 ATCGGTGGGACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 377157 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 377156 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCTGCAACCAAGGG 377098 Query 19172 ATTCGAGATTGG 19183 || || ||||| Sbjct 377097 CTTTGAAATTGG 377086 Score = 87.8 bits (96), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| || | | || || || || | Sbjct 462936 TCGACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGG 462995 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| | Sbjct 462996 GCCGCCACAAGCTCGTCATCCTCGACGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAG 463055 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || |||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 463056 CGCTCCGCAGGACGATGGAACTCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 463115 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | | |||||||| | | || ||||| |||||||| Sbjct 463116 AGAGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCAT 463158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126315844769