Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq46 228 1e-53 seq94 102 1e-15 seq75 96.9 5e-14 seq136 91.5 2e-12 >seq46 Length=827519 Score = 228 bits (252), Expect = 1e-53 Identities = 284/388 (73%), Gaps = 17/388 (4%) Strand=Plus/Minus Query 259795 CGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGT 259854 ||| || || ||| | |||||||||||||||||| ||||| |||| | |||| | Sbjct 800787 CGAACGCCCGCAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGG---TCACGACAT 800731 Query 259855 CGACAATGCGCTGGAGCACGTGCTCGCCACC-TACGAGGCCATGTCGCAGCAGTTGTTCA 259913 ||| || ||| || || | | ||| | |||||| ||| | |||| Sbjct 800730 CGA------------GCGCGT-CTTGCAATCGTACAACCTCATGTCTGAGCGCTACTTCA 800684 Query 259914 CCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCT 259973 || || |||| || ||||| |||||||| ||||| | ||||||| ||||||||| | Sbjct 800683 CCCACGCCTCGCCGACACTCTTCAATGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTT 800624 Query 259974 TTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCG 260033 | ||| | ||||||| |||||||| || |||||||| |||||||||||| ||||| Sbjct 800623 TCCTGGTCACGATGAAGGATGATTCGATTGAAGGCATCTACGACACGCTCAAGACGTGCG 800564 Query 260034 CGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGG 260093 |||||||||||||| | ||||| || |||||||| | ||||| | ||||| | | Sbjct 800563 CGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCG 800504 Query 260094 GCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTT 260153 || ||||| | |||||||| |||||| | || |||||| | || |||||||| || || | Sbjct 800503 GCTCCTACATCGCGGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCT 800444 Query 260154 TTAACGACACGGCGCGCTACGTCGACCA 260181 ||| |||| ||||||||||||||||| Sbjct 800443 ACAACAACACCGCGCGCTACGTCGACCA 800416 Score = 89.7 bits (98), Expect = 7e-12 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 799044 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 798986 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| |||||||| || ||||||||| | || | | || Sbjct 798985 TGTCGGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 798927 Query 263291 A-CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAG 263349 | ||| ||| | | |||||||||||||| ||| | ||| || || || ||| Sbjct 798926 AGCCCAACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAG 798867 Query 263350 ACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGAT 263409 || ||||||||||| ||||||| || |||| | | || || | || |||||||| Sbjct 798866 ACGGGCATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCGATCAAGTTTACCGTCGAC 798807 Query 263410 CA 263411 || Sbjct 798806 CA 798805 >seq94 Length=1157722 Score = 102 bits (112), Expect = 1e-15 Identities = 169/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| | |||| ||||||| ||||||||||||||||| ||| | ||| Sbjct 235331 GATCTGGGCACAGTACAAGAAAG-CCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 235389 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | | |||||| ||| | |||||||||| | |||||| Sbjct 235390 TGTCCAAGGATATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 235449 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| || Sbjct 235450 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 235508 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 235509 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 235565 >seq75 Length=1932057 Score = 96.9 bits (106), Expect = 5e-14 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| |||| || ||| Sbjct 284495 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGTATCTC 284554 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCT-CCAACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| || || ||| || |||| | ||| |||||| | |||||| Sbjct 284555 CCTCGAGGCTT----CCAAGCTCGCGACCTACAACCACAAGGCGACGATCTCCTCGCGCG 284610 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 ||||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 284611 AGATCCAGACCTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 284670 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 284671 AAGGCACCA 284679 Score = 96.9 bits (106), Expect = 5e-14 Identities = 162/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 602824 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 602771 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||||||||| | || |||||| | ||| || ||| | Sbjct 602770 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCACCCTCGAAGC--GTC--CA 602715 Query 725036 GGCGCGCT-CCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || ||| || |||| | ||| ||| | | || ||||||||||||||| | || | Sbjct 602714 AGCTCGCGACCTACAACCACAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCC 602655 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 602654 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 602606 Score = 96.9 bits (106), Expect = 5e-14 Identities = 162/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 1374307 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1374360 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||||||||| | || |||||| | ||| || ||| | Sbjct 1374361 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCACCCTCGAAGC--GTC--CA 1374416 Query 725036 GGCGCGCT-CCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || ||| || |||| | ||| ||| | | || ||||||||||||||| | || | Sbjct 1374417 AGCTCGCGACCTACAACCACAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCC 1374476 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1374477 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1374525 >seq136 Length=1817790 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/241 (69%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| |||||| || ||| || || | ||||||||| ||||||| ||| |||||| Sbjct 1454416 GATTTGGGCCATGTACAAACAAGCCCAAG-CGTCCTTTTGGTCCGCCGAAGAGATCGACC 1454474 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC-------GCTGAGCGACGACGAGCGCCATTTC 1455887 ||||| |||| ||||| | || | ||| | | ||||||| ||| | || Sbjct 1454475 TCGGCAACGAC---CTCCAC-GACTGGCACCACAAGCTCAACAACGACGAACGCTACTTT 1454530 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||| |||||| || |||||||| ||||| ||||| ||||| |||| Sbjct 1454531 ATCGCCCACGTGCTCGCC-TTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAATCTGGT 1454589 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || | || || ||||| || || | ||||| | | ||||| ||||| ||||| Sbjct 1454590 CGAGAGGTTCTCGAGCGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGGTTTCAGAT 1454649 Query 1456008 C 1456008 | Sbjct 1454650 C 1454650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796057061434