Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq116 158 2e-33 seq94 113 6e-20 >seq116 Length=1878684 Score = 158 bits (174), Expect = 2e-33 Identities = 275/395 (70%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 51068 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 51127 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || || Sbjct 51128 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 51187 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| ||||| ||| |||||| ||| ||| | ||||| Sbjct 51188 GATCGTCAAGAACTACCGCGAGTCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 51247 Query 9335 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATC 9392 ||| || || ||| | || ||| ||| |||||| || | |||||| | |||| | | || Sbjct 51248 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATCTCCCGA-GCTGTC 51305 Query 9393 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 9452 | ||| | ||| || |||| | | | | | || || || | || || | Sbjct 51306 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGT 51365 Query 9453 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 9512 |||||||| |||||| ||||| || || | ||||||| | ||||| || ||||| Sbjct 51366 GATTGGGGACACGCGCGCGACTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACC 51425 Query 9513 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547 ||||||| | ||| | || |||||||||||||| Sbjct 51426 CCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 51460 >seq94 Length=1157722 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 419400 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 419459 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| |||||| |||||||||| | ||| | || || Sbjct 419460 CGAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 419519 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 419520 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 419579 Query 9335 CCATGAATCACC 9346 ||| || || || Sbjct 419580 CCACGAGTCCCC 419591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030767487200