Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq116 165 9e-36 seq136 131 2e-25 seq46 131 2e-25 seq94 114 2e-20 >seq116 Length=1878684 Score = 165 bits (182), Expect = 9e-36 Identities = 276/394 (70%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| ||||| ||| ||| || || ||| || || || ||| | Sbjct 51069 CGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 51128 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| ||||||||| | ||| | || ||| Sbjct 51129 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTGG 51188 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| ||||| ||| |||||| ||| ||| | |||||| Sbjct 51189 ATCGTCAAGAACTACCGCGAGTCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAAC 51248 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGAT-TACCGAGGGTATCA 7469 || || || ||| | || ||| ||| ||||||||| | |||||| | |||| | | || Sbjct 51249 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATCTCCCGA-GCTGTCG 51306 Query 7470 AACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAG 7529 | ||| | ||| || |||| | | | | | || || || | || | | | Sbjct 51307 CCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTG 51366 Query 7530 ATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAG 7589 ||||||| |||||| ||||| || || | ||||||| | ||||| || ||||| Sbjct 51367 ATTGGGGACACGCGCGCGACTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACCC 51426 Query 7590 CCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 ||||||| | ||| | || |||||||||||||| Sbjct 51427 CCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 51460 >seq136 Length=1817790 Score = 131 bits (144), Expect = 2e-25 Identities = 236/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 1192559 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 1192618 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 1192619 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 1192678 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCGCGA 169336 | ||||| ||| ||||| ||| || ||| | | || | || | | || || || Sbjct 1192679 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 1192735 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||||||||| |||| || ||||| ||||| | Sbjct 1192736 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 1192795 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| ||||| | ||| || || || || ||||| | ||||||||| || || Sbjct 1192796 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 1192855 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 169491 || | | | |||||| || ||||||||||| || Sbjct 1192856 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 1192890 >seq46 Length=827519 Score = 131 bits (144), Expect = 2e-25 Identities = 516/806 (64%), Gaps = 17/806 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| | || || ||||| | ||||| || || Sbjct 800781 CCCGCAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGGTCACGACATCGAGCGCGT 800722 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| | | ||| || ||||| | | |||| ||||| | || || ||||| Sbjct 800721 CTTGCAATCGTACAACCTCATGTCTGAGCGCTACTTCACCCACGCCTCGCCGACACTCTT 800662 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 |||||| || || || || || | || || ||||| || | | ||||| || Sbjct 800661 CAATGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACGATGAAGGATGA 800602 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || ||||| | || || | | ||| |||| ||||| ||| || || Sbjct 800601 TTCGATTGAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 800542 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || || |||||| | | | || | ||| || ||| ||| || Sbjct 800541 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCGGGCACG 800484 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || || | || ||||| || || | ||| ||| |||||||| Sbjct 800483 AACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 800424 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| ||| | |||| |||| || ||||||||| Sbjct 800423 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCATGG 800367 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | |||||||| || | || ||||| || | ||||| | ||| Sbjct 800366 CACGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCATGGCAAGGAGGAAGTCCGC 800307 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || |||||||||| || ||||||||||| ||||| || ||| || | || |||| Sbjct 800306 GCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGG 800249 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | ||| | ||||| || || | | || || || ||| ||| | | | Sbjct 800248 CCGCCGGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATG 800189 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | || ||||| ||| | | | ||| ||||| | || || || || | |||| Sbjct 800188 GCGAAGAGTTCCGCGCCTTGTTCGAAAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA 800129 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || || | | ||| | || ||||| | | || ||| ||||| | || | Sbjct 800128 TCCCCGCGCAAAAACTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCCT 800069 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||| |||||||||||| ||| |||| || |||||||| | || ||||| Sbjct 800068 TCATGCTCTACAAAGACGCCGCGAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCA 800009 Query 104991 AGAGTTCCAATCTCTGTACAGAAATC 105016 || || || || || || || ||| Sbjct 800008 AGTCGTCGAACCTGTGCACCGAGATC 799983 >seq94 Length=1157722 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || ||| || || || || | Sbjct 419401 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 419460 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| |||||| |||||||||| | ||| | || ||| Sbjct 419461 GAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGG 419520 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 419521 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 419580 Query 7412 CATGAATCACC 7422 || || || || Sbjct 419581 CACGAGTCCCC 419591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259655350680