Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq46 273 2e-68 seq136 134 2e-26 >seq46 Length=827519 Score = 273 bits (302), Expect = 2e-68 Identities = 521/765 (68%), Gaps = 2/765 (0%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||| ||| ||||| | ||| ||| | ||||| Sbjct 800767 TCATGCGTGTCGCCGTTGGCATCCATGGTCACGACATCGAGCGCGTCTTGCAATCGTACA 800708 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | ||||| || |||||| |||| || || ||||| || || ||| Sbjct 800707 ACCTCATGTCTGAGCGCTACTTCACCCACGCCTCGCCGACACTCTTCAATGCCGGAACGC 800648 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| || |||||||| ||||||||||||| ||||| || |||| Sbjct 800647 CTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCA 800588 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 800587 TCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 800528 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| ||| ||||||||| | | | | Sbjct 800527 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCGGGCACGAACGGCTACTCGAACG 800468 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 800467 GCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 800408 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| |||||||||||||| |||||||| ||| | | |||| Sbjct 800407 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGGCACGCTGACGTCTTCGAGT 800348 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 800347 TCCTGGACCTTCGCAAGAACCATGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTCTTTG 800288 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || || || ||| | || ||| | || |||||| ||| Sbjct 800287 CGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCCGCCGGCGAGTGGCCCCTCT 800228 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| || |||||||||||| | ||||| || || ||||| || ||| Sbjct 800227 TCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAGTTCCGCGCCTTGT 800168 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| | |||| | |||||||| |||||||| | || |||| | | ||| Sbjct 800167 -TCGAAAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGCGCAAAAACTTTGG 800109 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || || | |||||| || || || | || | |||| |||||| || | Sbjct 800108 TACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCCTTCATGCTCTACAAAGACGCC 800049 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| | || ||||| |||||| | ||| ||||| ||| Sbjct 800048 GCGAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 800004 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || || || Sbjct 799041 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTC 798982 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || ||||| || || | |||||||||||| || || || |||||| | || || || Sbjct 798981 GGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 798922 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| | | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 798921 AACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGG 798862 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || |||||| Sbjct 798861 CATGTACTACTTGCGCACGCGCGCC 798837 >seq136 Length=1817790 Score = 134 bits (148), Expect = 2e-26 Identities = 288/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 1191678 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATAGGAATGATGGGGATGTACC 1191737 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||| || ||||| | | ||||| | ||| | ||||| | Sbjct 1191738 AAGACGGCTCGATGCTTTGGCCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 1191797 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| | |||| | Sbjct 1191798 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAAC--GAGCCGAA 1191853 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 1191854 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 1191913 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | || ||||| |||| |||| | Sbjct 1191914 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATT 1191973 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 1191974 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATC 1192033 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| || ||||| || || | | |||||||| || ||||| || Sbjct 1192034 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCCGGTTTGAAC 1192093 Query 152290 CCGTC 152294 || || Sbjct 1192094 CCATC 1192098 Score = 102 bits (112), Expect = 9e-17 Identities = 182/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 1191833 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 1191892 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || Sbjct 1191893 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATG 1191952 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 1191953 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCG 1192012 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 1192013 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 1192072 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| || || | ||||| Sbjct 1192073 TTGCGTTGACCCGGTTTGAACCCATC 1192098 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 1193843 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 1193902 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 1193903 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 1193952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214926088600