Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12- 23] 157 sequences; 32,762,276 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq63 104 1e-17 >seq63 Length=1462319 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||| || ||||| ||||| | || || || Sbjct 870394 AGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGG 870335 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || || ||||||||||| || || | || ||| Sbjct 870334 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 870275 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | ||| ||||| ||| || || | ||| Sbjct 870274 TTGTCT-TGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGT 870216 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | ||| || || || |||||||| Sbjct 870215 GATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870177 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| ||||| || |||||| || ||||| ||||| | || || || Sbjct 870622 AGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGG 870563 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || || ||||||||||| || || | || ||| Sbjct 870562 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 870503 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | ||| ||||| ||| || || | ||| Sbjct 870502 TTGTCT-TGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGT 870444 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | ||| || || || |||||||| Sbjct 870443 GATCGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 870405 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| ||||| || |||||| || ||||| ||||| | || || || Sbjct 870850 AGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGG 870791 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || || ||||||||||| || || | || ||| Sbjct 870790 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCC 870731 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | ||| ||||| ||| || || | ||| Sbjct 870730 TTGTCT-TGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGT 870672 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || | ||| || || || || ||||| Sbjct 870671 GATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728997784581