Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900011735.1_202016-12-
23] 157 sequences; 32,762,276 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq136 102 7e-17
seq86 100 2e-16
seq63 98.7 9e-16
>seq136
Length=1817790
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| ||||| || || |||||||| || || || | || ||
Sbjct 238889 CACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTC 238948
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || ||||| |||||||| | || | || || |||||
Sbjct 238949 GAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTG 239008
Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| ||| |||||| || || | ||||| | |
Sbjct 239009 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCT 239067
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283
| ||||| || || || |||||||||||||
Sbjct 239068 TGCCCGTGAGGGTCTTGACAAAGATTTGCA 239097
>seq86
Length=231977
Score = 100 bits (110), Expect = 2e-16
Identities = 160/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || || ||| ||||| || || ||||||||
Sbjct 66998 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 67057
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || || | || || ||||| ||||| ||||| || ||||| |||||||| | ||
Sbjct 67058 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 67117
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235
| || || ||||| ||| || |||| ||| | | | ||| ||| |||||| |
Sbjct 67118 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGA 67176
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282
| || | ||||| | || ||||| || || || ||||||||||||
Sbjct 67177 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 67223
>seq63
Length=1462319
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 625544 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 625485
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || || || ||||| | ||| | || ||| || |||
Sbjct 625484 GAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCCTG 625425
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 625424 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 625366
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 625365 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625335
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 625772 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 625713
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || || || ||||| | ||| | || ||| || |||
Sbjct 625712 GAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCCTG 625653
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 625652 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 625594
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 625593 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625563
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || || ||||| || || || | || ||
Sbjct 626000 CACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTC 625941
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || || || || ||||| | ||| | || ||| ||||||
Sbjct 625940 GAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTG 625881
Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 625880 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCT 625822
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 625821 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625791
Score = 93.3 bits (102), Expect = 4e-14
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 870842 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 870783
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || | ||||| ||||| | ||| | || || ||||| |
Sbjct 870782 GAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT-T 870724
Query 39195 GATTTTCTGT-TTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
|| | | || |||| ||| | || ||| || |||||| || || | ||||| |
Sbjct 870723 GAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTC 870665
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| ||||| || || |||||||||||
Sbjct 870664 TTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429544778091341
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |