Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq26 159 7e-34 >seq26 Length=1828681 Score = 159 bits (176), Expect = 7e-34 Identities = 467/715 (65%), Gaps = 11/715 (2%) Strand=Plus/Plus Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817 ||||| || |||||| ||| ||| || |||| || ||||| ||||| | Sbjct 20824 GTCATCATGGCCAACGCCGACCGCCTCAACAGCGCCGTTATCTACGATCGCGATTTCGGC 20883 Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| ||||| ||| |||||| | || || || |||||| Sbjct 20884 TACAACTACTTTGGCTTCAAGACGCTCGAGCGCTCGTATTTGCTTCGCATCGACGGCAAG 20943 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| |||||| || |||||| | ||||| || || ||||| || ||| | ||| Sbjct 20944 GTCGCCGAACGACCGCAACACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGAC 21003 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||| |||| | || |||||| | ||| || |||| | || || ||| | Sbjct 21004 ATCGAGCGCGTCTTGCAGTCGTACAACCTCATGTCGGAGCGCTACTTTACCCACGCCTCG 21063 Query 248998 CCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 ||||| |||||||||||||| || | || || ||||| |||||||| || | | Sbjct 21064 CCGACACTCTTCAACGCCGGAACGCCTC-ACCCGCAGCTTTCGTCGTGCTTCCTGGTCAC 21122 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGAT 249113 ||| | || || || |||| ||||| || |||||||| | ||||| ||| || Sbjct 21123 GATGAAGGATGATTCGATCGAAGGCATCTACGACACGCTCA---AGACGTGCGCGCTCAT 21179 Query 249114 TTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTA 249173 || || ||| || || |||||| | | || ||||||||| |||| || || || Sbjct 21180 CTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTA 21239 Query 249174 CATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 |||| || || || || | | || ||||| ||| | || || || | Sbjct 21240 CATCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAA 21299 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTT 249290 ||||| | | | || |||| | || | || || | ||||| || || | Sbjct 21300 TACCGCGCGCTACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCT 21359 Query 249291 GGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGA 249350 || ||||||||||| | || |||||||||||| | |||||| ||||||| || Sbjct 21360 CGAGCCTTGGCACGCCGACGTCTTTGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGA 21419 Query 249351 GCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCG 249410 | | | || ||||| ||||||| | || ||| || |||| | |||||| || Sbjct 21420 GGAAGTCCGCGCTCGTGATCTCTTCTTTGCGCTCTGGATCCCCGATCTCTTCATGGAGCG 21479 Query 249411 CGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTC 249465 ||| |||||| |||||| ||| | || | | || |||| ||||| | |||| Sbjct 21480 AGTCGAGGCCGCCGGCGACTGGCCCCTGTTCTGCCCCGCCGAAGCCCCCGGCCTC 21534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 115380 GTCAACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGT 115439 |||||| | ||| |||| || || || |||| || |||||||| |||||||||||| | Sbjct 1459993 GTCAACCT-CGAGTACCTCAAGATGGCGCATCGACTTTGAATCGGCTCGATGATTTTGTT 1460051 Query 115440 GGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCG 115499 | | |||||| | | | ||| || || ||| | ||| | | ||||| ||| || Sbjct 1460052 GCTCTGGTTGCACGCAAAGGCGAAGCGGGTGGTGTTGGAGAAGATTTCCATCGTCCTGCG 1460111 Query 115500 CAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| || || || || ||||||||||| || |||||||| | ||| | ||| Sbjct 1460112 GAGCGCTTGCTGGGCTCCCGGGGTCATCGAGTCGGCTTCGTCGAGGATGACGAGCTT 1460168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765890967616