Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15 140 2e-28 seq36 129 4e-25 seq24 105 4e-18 >seq15 Length=534025 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 503015 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 502956 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 502955 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 502921 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 514834 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 514775 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 514774 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 514740 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 526666 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 526607 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 526606 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 526572 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 499551 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 499492 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 499491 GCCAATATTTAGCTTTA 499475 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 511369 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 511310 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 511309 GCCAATATTTAGCTTTA 511293 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 523202 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 523143 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 523142 GCCAATATTTAGCTTTA 523126 >seq36 Length=474693 Score = 129 bits (142), Expect = 4e-25 Identities = 86/94 (91%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957 |||||||||||||||||||||||||||||||||||||||||| | || ||||| ||| Sbjct 584 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGACAGTGGGAATCT-GTT 642 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 643 AATCCATTCATGCGCGTCACTAATTAGATGACGA 676 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4044 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4103 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 4104 GCCAATATTTAGCTTTA 4120 >seq24 Length=1624245 Score = 105 bits (116), Expect = 4e-18 Identities = 273/406 (67%), Gaps = 9/406 (2%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCG-CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||||||||||||| ||||| ||| ||| |||| ||||||| || ||||| | Sbjct 363463 GTTCTACCGCTACAAGATGCCCTCGC-TCTTGACCAAAATCGAGGGCCGCGGCAACGGCA 363405 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA-CGCCCTGCCACC 6317 | || || || || ||||||| |||| ||||| || || | | ||||| | || Sbjct 363404 TCAAGACTGTGTTTCCCAACATGGCTGATGTCGCGCGAGC-CTTGAATCGCCCGTCGTCC 363346 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 |||||||| || | || ||||||||||| ||||| || || || || | | | | Sbjct 363345 TACCCGACCAAGTTCTTTGGGTGCGAACTCGGCGCCCAAGCGACCTTCAATGATGAGACC 363286 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || |||| |||||| ||||| |||| | | |||| ||||| || |||| | Sbjct 363285 GAACGCTACATCGTCAACGGCGCGCACGAGACGAATCGTCTGCGTGACTTGCTCGACGTC 363226 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 || || |||||| ||||| || | ||| | ||||| || || || || || Sbjct 363225 TTCATCGACAAGTTCGTGCTATGCGCGTCGTGCAAAAACCCCGAAACGGAACTCAT--CA 363168 Query 6498 TCTACCAAGAGAAACACCATCTCTCAG-GGCTGCAAAGCGTGCGGTTACCATGGCAAGCT 6556 || | |||| || |||| ||| | | |||||| || ||||| | | ||||| | Sbjct 363167 TCACCAAAGACGAA-TTCATC-CTCCGTGACTGCAAGGCATGCGGCAAGCGCGGCAACGT 363110 Query 6557 GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | |||||||||| |||||||| || ||||| || ||| Sbjct 363109 CGACATGCGCCACAAACTCACGACCTTCATCCTTAAGAACCCCCCA 363064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947048959747