Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12-
23] 37 sequences; 25,667,824 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq15 140 2e-28
seq36 129 4e-25
seq24 105 4e-18
>seq15
Length=534025
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 503015 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 502956
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 502955 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 502921
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 514834 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 514775
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 514774 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 514740
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 526666 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 526607
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 526606 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 526572
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 499551 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 499492
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 499491 GCCAATATTTAGCTTTA 499475
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 511369 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 511310
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 511309 GCCAATATTTAGCTTTA 511293
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 523202 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 523143
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 523142 GCCAATATTTAGCTTTA 523126
>seq36
Length=474693
Score = 129 bits (142), Expect = 4e-25
Identities = 86/94 (91%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957
|||||||||||||||||||||||||||||||||||||||||| | || ||||| |||
Sbjct 584 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGACAGTGGGAATCT-GTT 642
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| ||||||||||||||||||||||||||||
Sbjct 643 AATCCATTCATGCGCGTCACTAATTAGATGACGA 676
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 4044 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4103
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 4104 GCCAATATTTAGCTTTA 4120
>seq24
Length=1624245
Score = 105 bits (116), Expect = 4e-18
Identities = 273/406 (67%), Gaps = 9/406 (2%)
Strand=Plus/Minus
Query 6200 GTTCTACCGCTACAAAATGCCG-CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258
||||||||||||||| ||||| ||| ||| |||| ||||||| || ||||| |
Sbjct 363463 GTTCTACCGCTACAAGATGCCCTCGC-TCTTGACCAAAATCGAGGGCCGCGGCAACGGCA 363405
Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGA-CGCCCTGCCACC 6317
| || || || || ||||||| |||| ||||| || || | | ||||| | ||
Sbjct 363404 TCAAGACTGTGTTTCCCAACATGGCTGATGTCGCGCGAGC-CTTGAATCGCCCGTCGTCC 363346
Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377
|||||||| || | || ||||||||||| ||||| || || || || | | | |
Sbjct 363345 TACCCGACCAAGTTCTTTGGGTGCGAACTCGGCGCCCAAGCGACCTTCAATGATGAGACC 363286
Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437
|| |||| |||||| ||||| |||| | | |||| ||||| || |||| |
Sbjct 363285 GAACGCTACATCGTCAACGGCGCGCACGAGACGAATCGTCTGCGTGACTTGCTCGACGTC 363226
Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497
|| || |||||| ||||| || | ||| | ||||| || || || || ||
Sbjct 363225 TTCATCGACAAGTTCGTGCTATGCGCGTCGTGCAAAAACCCCGAAACGGAACTCAT--CA 363168
Query 6498 TCTACCAAGAGAAACACCATCTCTCAG-GGCTGCAAAGCGTGCGGTTACCATGGCAAGCT 6556
|| | |||| || |||| ||| | | |||||| || ||||| | | ||||| |
Sbjct 363167 TCACCAAAGACGAA-TTCATC-CTCCGTGACTGCAAGGCATGCGGCAAGCGCGGCAACGT 363110
Query 6557 GGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
|| | |||||||||| |||||||| || ||||| || |||
Sbjct 363109 CGACATGCGCCACAAACTCACGACCTTCATCCTTAAGAACCCCCCA 363064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947048959747
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |