Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15 109 1e-18 seq10 100 6e-16 seq30 91.5 3e-13 >seq15 Length=534025 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| ||||| ||||| || ||||| ||||| || |||| |||||| Sbjct 222147 GGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACCCTGATCAAGCTCTTGACGGGCGAG 222206 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || || |||||| |||||| |||| | || ||||| || Sbjct 222207 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCACCCCAACTTGCGTGTAGCGTACGTGGCC 222266 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| || Sbjct 222267 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAA 222326 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 222327 TGGCGTTA 222334 >seq10 Length=1588530 Score = 100 bits (110), Expect = 6e-16 Identities = 250/380 (66%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || || ||| |||||||| | || || |||||| | || | ||||||||||||| Sbjct 565128 GATTTTATCAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAATGTGCGTTCTATTCCC 565187 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | ||||| ||||||| || || ||| || | || | |||||||| Sbjct 565188 TCTGTCATTGATGGGTTCAAGCCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 565247 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || ||||| || ||||||| || || ||||| || |||| || | Sbjct 565248 AAATTGACGCAAGAGATCAAGGTCGGACAATTGGGCGGTTACGTCGCCGAGCACTCGGCG 565307 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||| |||| |||| || |||| | || |||| || | | ||| Sbjct 565308 TACCATCACGGTGAAATGAGTTTGCAAGGCACCATCATCGGTCTGGCGCAACAGTTTGTA 565367 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || ||| |||||||| |||||| | ||| | ||| Sbjct 565368 GGGTCCAACAACCTCAACATTCTCGACCCGAACGGTCAATTTGGTACGCGTTTGCAAGGT 565427 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877 || || || ||||| || | || |||||||| || |||| || | ||||| Sbjct 565428 GGTAAAGACGCGGCTTCGGCTCGTTACATCTTTACGAACGTGTCATCCATCACGCGTAGC 565487 Query 218878 GTGTTCAATCAGGCCGATGA 218897 || ||| ||| || ||||| Sbjct 565488 GTTTTCCATCCCGCTGATGA 565507 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||| Sbjct 683694 AGCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAG 683635 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 683634 CCCCGCATTGGGC 683622 Score = 89.7 bits (98), Expect = 1e-12 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | | ||||| || Sbjct 564444 TGCACACTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTCTCGGGTCTGGCT 564503 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| ||||||| | || || ||||| ||||||||||| Sbjct 564504 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCTTTGCGAGGAAAGCTACTCAACGTGCGT 564563 Query 217957 GATGCCTCGGTTTCAAGCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCCT 218015 || || ||| |||| | || | ||||| |||||| || |||||||| ||| | Sbjct 564564 GAAGCGGCGG-GCAAAGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCTT 564622 Query 218016 GGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGTCA 218074 ||||| ||| || || ||||| || | || | || || ||||| ||| ||| Sbjct 564623 AGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAGCTCA 564681 Query 218075 TGCTTATGACTGATGCTGATGTTGACGGGTCCCACAT 218111 || | ||| | ||| ||| || || || ||||| Sbjct 564682 TGATCATGGCCGATCAAGATCACGATGGATCGCACAT 564718 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 696844 GCCCGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 696903 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 696904 CCCGCATTGGGC 696915 >seq30 Length=1557973 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 444102 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 444161 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 444162 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 444221 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 444222 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 444281 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 444282 GGCTTCCT 444289 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || ||||| || | Sbjct 450637 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATCCTGTTCGAG 450578 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| ||||| |||||| Sbjct 450577 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTTAACGTCGCCTGG 450518 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 450517 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 450458 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 450457 GGCTTCCT 450450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836312741117