Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq26 376 5e-99 seq33 129 1e-24 seq10 87.8 3e-12 >seq26 Length=1828681 Score = 376 bits (416), Expect = 5e-99 Identities = 869/1295 (67%), Gaps = 32/1295 (2%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| ||||||||||||||||||| |||||| | | ||| |||| | Sbjct 22076 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTTGCGCGCCTCGGGT 22017 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 22016 GAATCGAACGGCATCGCCAAGGCCATGAATGCGTCGGCGAGACCTTGCACTCCGATGCCG 21957 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| || ||| |||||||| |||| |||| Sbjct 21956 ATGGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGGTAGTAGTTAACGTCA 21897 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| |||| || |||||| Sbjct 21896 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAGCTTCTTGAAGTCG 21837 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | | || || ||| ||| ||| || | ||| |||| Sbjct 21836 TACACGCCG---TTCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCC 21795 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||||||||| ||| |||| || ||||| || || |||||||| ||||| Sbjct 21794 AAGTTGCAGACGGCGCACTCGTCCGGCGCGGAGTACTCGATGATTTCGGTGCACAGGTTC 21735 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||| ||||| |||| || || || || || ||| ||||||||||||| Sbjct 21734 GACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTCTTGTTTGCGGCGTCCTTGTAG 21675 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCT 244869 |||||||| || ||||| |||| |||||| |||| | ||| || ||| || | Sbjct 21674 AGCATGAACGGGTTGCCGGTTTCGACCTGGGCCTCGAGAATCGC-GTACCAAAGCTTTTG 21616 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 || || |||| | || |||||| ||||| | ||||||| ||| Sbjct 21615 CGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAGGGCGCGGAA 21556 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| | || |||| ||||||||| || ||||| | || ||| || Sbjct 21555 CTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAACAGGGGCCAGTC 21496 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| || ||| ||| | || ||||||||| |||||||||||||| || |||||| || Sbjct 21495 GCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGGGGATCCAGAGCGCAAAGAAGAGATC 21436 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| | || |||| || ||||||||||| Sbjct 21435 ACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCAAAGACGTC 21376 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||||| Sbjct 21375 GGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTC 21316 Query 245170 CACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | || |||| ||| || || | || || |||||||| |||| ||| Sbjct 21315 GACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGCC 21256 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||| ||||| |||||| | ||| | | | || |||| |||| || || | || Sbjct 21255 GTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACC 21196 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| |||||||||||| ||||| |||||| ||||| ||||| || || Sbjct 21195 ACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCGATCGA 21136 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 || |||||| ||| ||| ||||| || || ||||| || | || | | | ||| Sbjct 21135 ATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTT 21076 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAG 245469 ||| || || || |||||||||||||||||| ||| | || ||||| ||| | Sbjct 21075 GAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGACATGAGGTTGTACGACTGCA- 21017 Query 245470 CAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG- 245526 ||| ||| ||||||| || |||||||| | |||| | |||||| |||| || Sbjct 21016 -AGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACGCGCATGAGCATGTGTTGC 20958 Query 245527 GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTTG 245584 || ||| ||| | | || | ||| | |||| || |||||||||||||||||| Sbjct 20957 GGTCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAATACGAGCGCTCGAGCGTCTTG 20901 Query 245585 AACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTCG 245644 || |||||||| |||||| || ||| | || | ||||| || ||| | ||| Sbjct 20900 AAGCCAAAGTAGTTGTAGCCGAAATCGCGATCGTAGATAACGGCGCTGTTGAGGCGGTCG 20841 Query 245645 GCG-TGCTTCTGACTGACCTCGTAAAACTTTTGCG 245678 ||| || ||| |||||||||| || ||||| Sbjct 20840 GCGTTGGCCATGA-TGACCTCGTATGTCTCTTGCG 20807 Score = 84.2 bits (92), Expect = 4e-11 Identities = 170/252 (67%), Gaps = 13/252 (5%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || | ||||||||||| || | || |||||||||||| || || Sbjct 22928 ACGGTGAACTTGATCGCCCCGACGGCGGCCCGTGTGCGCAAGTAGTACATGCCCGTTTTC 22869 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 ||||| | |||| ||| || |||||| | ||| || | | |||| | Sbjct 22868 AGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATC-----------G 22820 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||| |||| ||| || |||||| || || |||||||| ||||| | || || Sbjct 22819 TCGGGCTCG-ACAAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGGTCG 22761 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||| || | |||| | ||| || || | ||| | | ||||||||||||| |||| Sbjct 22760 GCGGACAAGTCAATGATGGTCTTTTGCGAGAGCTCCCAAACGGTCTTGTAGATGGCCTTG 22701 Query 243977 AGGT-GCTCGGG 243987 || | ||||||| Sbjct 22700 AGATCGCTCGGG 22689 >seq33 Length=986392 Score = 129 bits (142), Expect = 1e-24 Identities = 189/263 (72%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 95606 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 95665 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| |||||| ||||| Sbjct 95666 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 95725 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG-GGC---CATCATCACGGA 42919 || ||||||| || ||| |||| || ||| ||| |||||||| ||| Sbjct 95726 TC---CCACCTCGAGC-GAAGACCTC---ACCCCGACACCGTGGCGCTCATCATCAAGGA 95778 Query 42920 GGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCAT 42979 ||||||||| ||||| ||||| ||| | || || | || ||| || ||||||| Sbjct 95779 GGCCGTGGAAATCGAAAAGGAATTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCAT 95838 Query 42980 GAACCACGACCTCATGTGCAAGT 43002 ||| | ||||||||| ||| Sbjct 95839 GAATGCGAAGCTCATGTGCCAGT 95861 >seq10 Length=1588530 Score = 87.8 bits (96), Expect = 3e-12 Identities = 172/247 (70%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCAC 42799 || ||| |||||||||||||||| ||||||||| | ||| || ||||| || ||| | Sbjct 315634 TCAGGCTCCTTCGCCTCCATCTTTTGGCTCAAGAAACGAGGCCTC-ATGCCTGGCCTCTC 315576 Query 42800 CTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 ||||| ||||| ||||| | ||||| || || |||| || || || ||| | Sbjct 315575 TTTCTCCAACGAGCTCATTTCGCGCGACGAAGGTCTTCATACCGAATTCGCGGTGCTCTT 315516 Query 42860 GTTCTCGAGCCACCTCAGGCACAAGCCCTCG--AAGGAGCGGGTC--CGGGCCATCATCA 42915 |||| ||||| || | || || || | ||||| || | ||| ||| | | Sbjct 315515 GTTC---AGCCATCTGAA-CAAGAGACCAGGTCAAGGATTGGTGCATCGG---ATCGTGA 315463 Query 42916 CGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCG 42975 |||||| || || ||||||||||| ||| | || || | ||||||||| | ||| | | Sbjct 315462 AGGAGGCGGTTGATATCGAGAAGGAATTCTTGACCGAGGCTCTGCCCGTGGCGCTGATTG 315403 Query 42976 GCATGAA 42982 | ||||| Sbjct 315402 GTATGAA 315396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338763243120