Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq26 100 3e-16 seq27 96.9 3e-15 seq10 93.3 4e-14 >seq26 Length=1828681 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | |||||| | || || || || ||||| ||||| || ||||| Sbjct 1064039 ATACCACCGCGGAGACGCAACACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCT 1064098 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | ||| || || || | || | ||||| ||||| || Sbjct 1064099 GCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGG 1064158 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || ||||| || || |||| || | || | ||||| |||||||| Sbjct 1064159 GGAATGCCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAAGACTC 1064217 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || ||||| || || || || ||||| || |||||| Sbjct 1064218 GACCTCGAGTGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCATC 1064269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 45109 TTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATA 45166 ||||| || || ||||| | | ||| | || || || || || || ||||| || || Sbjct 1062895 TTATTGACCACCACGGAGACGGAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTA 1062954 Query 45167 ATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTC 45226 ||| || || ||| || | || || || ||| | |||||||| |||||||| Sbjct 1062955 GTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTC 1063014 Query 45227 CGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAG 45285 || ||||| || || || ||||| || || |||| || | || | ||||| |||| Sbjct 1063015 TGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCCGAAG 1063073 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| || | || ||||| || || || || ||||| |||||||| Sbjct 1063074 ACTCGACCTCGAGGGTGATTGTCTTGCCCGTCAGCGTCTTGACAAAGATTTGCAT 1063128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || || || ||||| ||||| || ||||| Sbjct 1063127 ATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCT 1063186 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | ||| || || || | || | ||||| ||||| || Sbjct 1063187 GCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGG 1063246 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || |||||||| || |||| || | || | ||||| |||||||| Sbjct 1063247 GGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGA-CGTTGTCAATCGTGTCTGAAGACTC 1063305 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||| | || || ||||| |||||||| Sbjct 1063306 GACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 1063356 Score = 89.7 bits (98), Expect = 5e-13 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||| |||| | || ||||||||||| | |||| |||||||||||| |||||| ||| Sbjct 21634 ATTCTCGAGGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCTACAAGGACGCCGCAAAC 21693 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAAT-GTAGTAATCTTTGCTCCGAAAT 123706 | |||| | || || | ||| | || || || || | || | || || ||| ||||||| Sbjct 21694 AAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTCG-AACCTGTGCACCGAAAT 21752 Query 123707 TATCGAATACAGCGATGCCGATCAAGTG-GCCGTGTGTAATTTGGCTTCGAT 123757 ||||| ||| || |||| | |||| ||||| || || ||||| ||||| Sbjct 21753 CATCGAGTACTCCG-CGCCGGACGAGTGCGCCGTCTGCAACTTGGCCTCGAT 21803 >seq27 Length=880931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || |||||| || || ||| || | || Sbjct 150164 TGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGC 150105 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| || || |||||||| || ||||| || || Sbjct 150104 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 150045 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | ||| ||||| || Sbjct 150044 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 149986 Query 45317 TAGAGTTTTTACAAAAATTTGC 45338 ||||| || || || |||||| Sbjct 149985 AAGAGTCTTGACGAAGATTTGC 149964 >seq10 Length=1588530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || ||||| || ||||||||||| || |||||| || || ||| || | || Sbjct 1350987 TGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGAGCTGC 1351046 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| || || |||||||| || ||||| || || Sbjct 1351047 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTG 1351106 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||| |||||||| ||||| || | || ||||| || Sbjct 1351107 GTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 1351165 Query 45317 TAGAGTTTTTACAAAAATTTGCA 45339 || || || || || ||||||| Sbjct 1351166 GAGGGTCTTGACGAAGATTTGCA 1351188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002990948520