Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq26 228 1e-53 seq11 129 7e-24 >seq26 Length=1828681 Score = 228 bits (252), Expect = 1e-53 Identities = 287/393 (73%), Gaps = 17/393 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| || | ||| |||| ||||||||||| |||| |||||| || Sbjct 21320 TGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 21261 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||| | ||||| ||||| | ||||| | || ||| Sbjct 21260 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 21201 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 21200 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 21141 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || ||||||||||| |||||||| | ||| ||| Sbjct 21140 ATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGAGGCGTTCCG 21081 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 ||||||||||| || |||| || ||| || | || ||||||| || ||| | Sbjct 21080 GCGTTGAAGAGTGTCGGCGAGGCGTGGGTAAAGTAGCGCTCCGACATGAGGTTGTACGAC 21021 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 21020 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 20977 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 |||||||||||||| || || || ||| |||| Sbjct 20976 GCGCATGAGCATGTGTTGCGGTCGTTCGGCGAC 20944 Score = 129 bits (142), Expect = 7e-24 Identities = 289/440 (66%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||| |||||||||||||| | |||| | |||| || ||||||| ||||| | Sbjct 21760 ACTCGATGATTTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCG 21701 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 || ||| |||||||||||| ||||||| | || |||||| |||| ||| ||| Sbjct 21700 ATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCT 21641 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCGGCCCTNNNNN 1628340 ||| || || |||| | || ||||||| | || | || |||||||||| Sbjct 21640 CGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGCGGCCCTCCTTT 21582 Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400 || | |||| || ||||| |||||||| || Sbjct 21581 TCGTATTTCTCGAACAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCT 21522 Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCA 1628460 |||| || || || || | ||||||||| ||| | | | || ||| ||||| || Sbjct 21521 TCGGCGGGGCAGAACAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCG 21462 Query 1628461 CACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||| || || | ||||| || || || ||| |||||||||||||||||||| Sbjct 21461 GGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTG 21402 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 ||||| || | || | | |||||||||||| ||||| |||||| || ||||| Sbjct 21401 CGAAGGTCCAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCT 21342 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 || |||||| ||| || Sbjct 21341 CCGGGACGCTTGTTGCCACC 21322 Score = 122 bits (134), Expect = 1e-21 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 ||||||||||| |||| ||| || || |||||| || ||||||| ||||||||||| Sbjct 22934 TGGTCGACGGTGAACTTGATCGCCCCGACGGCGGCCCGTGTGCGCAAGTAGTACATGCCC 22875 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 || || || || || ||| ||||| |||||||||||||| || | ||||| | Sbjct 22874 GTTTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTCGGG 22815 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||||| ||| | || ||||| | Sbjct 22814 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGGTCGGCGGA 22756 Query 1627161 CATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGTC 1627220 || ||| ||| || | | | | |||||| ||||||||| ||||||||||||| || Sbjct 22755 CAAGTCAATGATGGTCTTTTGCGAGAGCTCCCAAACGGTCTTGTAGATGGCCTTGAGATC 22696 Query 1627221 G 1627221 | Sbjct 22695 G 22695 Score = 100 bits (110), Expect = 3e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 1540667 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCTGTG 1540726 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | |||||||||||||||||||| || || |||||||| Sbjct 1540727 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATTCCCGCAACCAAGGG 1540785 Query 19172 ATTCGAGATTGG 19183 ||||||||||| Sbjct 1540786 TTTCGAGATTGG 1540797 Score = 91.5 bits (100), Expect = 2e-12 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 ||||||| || ||||| ||||||| |||| || | | || || || || | Sbjct 1460236 TCGACGTTGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGG 1460177 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||||| | || ||| |||||||| | Sbjct 1460176 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGAGCCCAGCAAG 1460117 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 1460116 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACCCGCTTCGCCTTTGCGTGCAACC 1460057 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | |||||||| | | |||||||| |||||||| Sbjct 1460056 AGAGCAACAAAATCATCGAGCCGATTCAAAGTCGATGCGCCAT 1460014 >seq11 Length=1812982 Score = 129 bits (142), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 615684 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 615743 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 615744 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 615800 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | |||||| |||||| ||||| || ||||| Sbjct 615801 AGATGTCGTTGACGAACGAGTTGAGGATCAACATCGCCTTGTTCGAGATACCGGTGTCGG 615860 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 615861 GGTGGACCTGCTTCAACACCTTG 615883 Score = 129 bits (142), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 665887 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 665828 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 665827 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 665771 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | |||||| |||||| ||||| || ||||| Sbjct 665770 AGATGTCGTTGACGAACGAGTTGAGGATCAACATCGCCTTGTTCGAGATACCGGTGTCGG 665711 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 665710 GGTGGACCTGCTTCAACACCTTG 665688 Score = 105 bits (116), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| ||| | | ||||| ||| || | ||| |||||||| |||| || Sbjct 300033 GCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCGAGGTTTGGATCTCTCGCGACGAGA 299974 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| |||| || |||| Sbjct 299973 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGATGCCTCGGTGGCGATACGCTCGA 299917 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 299916 AGATGTCGTTGACGAACGAGTTGAGGATAAGCATCGCCTTGTTCGAGATACCCGTGTCGG 299857 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||| ||| Sbjct 299856 GGTGAACTTGCTTCAACACTTTG 299834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136163606729