Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12-
23] 37 sequences; 25,667,824 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq24 123 2e-23
seq10 93.3 3e-14
seq26 91.5 1e-13
seq27 82.4 6e-11
>seq24
Length=1624245
Score = 123 bits (136), Expect = 2e-23
Identities = 280/408 (69%), Gaps = 15/408 (4%)
Strand=Plus/Plus
Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAG-CGT-GCCGTGAT 34261
|| ||||| || || |||||||| |||| || || | | | ||| | ||| |||| | |
Sbjct 363065 GGGGGGTTCTTAAGGATGAAGGTCGTGAGTTTGTG-GCGCA-TGTCGACGTTGCCGCGCT 363122
Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATG--TTCTTTTTAGCGGACACGATGAGCTC 34319
|||||||| |||||| | || || ||| ||| | || | || |||||| ||
Sbjct 363123 TGCCGCATGCCTTGCAGTC---ACGGAGGATGAATTCGTCTTTGGTGAT--GATGAGTTC 363177
Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379
|| || ||||| | || || || | ||| |||||| |||||| | || ||||
Sbjct 363178 CGTTTCGGGGTTTTTGCACGACGCGCATAGCACGAACTTGTCGATGAAGACGTCGAGCAA 363237
Query 34380 GTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATC 34439
||| | | | | ||||| | ||||||||||||| | |||||| | | | ||
Sbjct 363238 GTCACGCAGACGATTCGTCTCGTGCGCGCCGTTGACGATGTAGCGTTCGGTCTCATCATT 363297
Query 34440 GACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACG 34499
|| || ||| ||||| || |||||||| ||| |||| |||||||| | ||| ||
Sbjct 363298 GAAGGTCGCTTGGGCGCCGAGTTCGCACCCAAAGAACTTGGTCGGGTAGGACGACGGGCG 363357
Query 34500 -TCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558
| |||| || |||| || | ||||||| | ||||||||||||||||||||
Sbjct 363358 ATTCAAG-GCTCGCGCGACATCAGCCATGTTGGGAAACACAGTCTTGATGCCGTTGCCGC 363416
Query 34559 TTCCTTCGACCTTGGCGCAGATGCG-CGGCATTTTGTAGCGGTAGAAC 34605
|| |||| |||| ||| ||| ||||| |||||||||||||||
Sbjct 363417 GGCCCTCGATTTTGGTCAAGA-GCGAGGGCATCTTGTAGCGGTAGAAC 363463
>seq10
Length=1588530
Score = 93.3 bits (102), Expect = 3e-14
Identities = 156/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 110274 TGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACG 110333
||||||| || ||||| || | || ||||| ||||| ||| |||| ||| | ||
Sbjct 1351188 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1351129
Query 110334 ATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAAC 110393
| || ||| | | || || ||||| ||||| |||||| | ||| || || |
Sbjct 1351128 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 1351069
Query 110394 AAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACA 110453
|| | || || | ||| || || ||||| ||||||| | | || | || ||||||||||
Sbjct 1351068 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACA 1351009
Query 110454 TTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
| ||||| || || ||| | ||| ||||| | | ||||| || ||
Sbjct 1351008 TCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGG 1350963
>seq26
Length=1828681
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || || |||||||| ||||| || |||| ||| ||
Sbjct 1063356 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCA 1063297
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1063296 GACACGATTGACAACGTCAAGACCAAGATTCAAGACAAGGAGGGCATTCCCCCAGACCAA 1063237
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || |||||||||
Sbjct 1063236 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAAC 1063177
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
|| || || || || || | ||| |||||
Sbjct 1063176 ATCCAGAAGGAGTCGACCCTCCACTTGGTG 1063147
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || |||||||| || || || |||| ||| |
Sbjct 1303354 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1303295
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1303294 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1303235
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1303234 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1303175
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1303174 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1303143
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || |||||||| || || || |||| ||| |
Sbjct 1303582 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1303523
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1303522 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1303463
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1303462 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1303403
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1303402 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1303371
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| || ||||| || || |||||||| || || || |||| ||| |
Sbjct 1304038 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1303979
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || |||||| ||||| || ||| | ||| || |||
Sbjct 1303978 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 1303919
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1303918 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1303859
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1303858 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1303827
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||| || || |||||||| || || || |||| ||| |
Sbjct 1305406 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 1305347
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || | | | | || || ||||| ||||| || ||| | ||| || |||
Sbjct 1305346 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 1305287
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
||| | || || | |||||| || || || ||||||| | | || | || || ||||||
Sbjct 1305286 CAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACGCTCGCCGACTACAAC 1305227
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
|||||||| || || || | ||| |||||||
Sbjct 1305226 ATTCAAAAGGAGTCGACCCTCCACTTGGTGTT 1305195
>seq27
Length=880931
Score = 82.4 bits (90), Expect = 6e-11
Identities = 153/225 (68%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 110275 GCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGA 110334
|||||| || ||||| ||| | || ||||| || || ||| |||| ||| | |||
Sbjct 149964 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 150023
Query 110335 TACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACA 110394
|| ||| | | || || ||||| ||||| |||||| | ||| || || ||
Sbjct 150024 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCA 150083
Query 110395 AAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACAT 110454
| | || || | ||| || || ||||| ||||||| | | || | || |||||||||||
Sbjct 150084 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACAT 150143
Query 110455 TCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || || | ||| |||| | | || ||||| ||
Sbjct 150144 CCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTCCGAGGTGG 150188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412841413834241
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |