Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq26 192 9e-43 seq11 145 1e-28 seq33 105 1e-16 >seq26 Length=1828681 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| || | ||| |||| ||||||||||| || | |||||| || Sbjct 21320 TGGTCGACGTAGCGCGCGGTATTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 21261 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||| | ||| | ||||| | ||||| | || ||| Sbjct 21260 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 21201 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 21200 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 21141 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| ||||||||||| |||||| | | ||| ||| Sbjct 21140 ATCGAATCATCCTTCATCGTGACCAGGAAGCACGACGAAAGCTGCGGGTGAGGCGTTCCG 21081 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || |||||||| || |||| Sbjct 21080 GCGTTGAAGAGTGTCGGCG 21062 Score = 145 bits (160), Expect = 1e-28 Identities = 292/439 (67%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || |||||||||||||| | |||| | | ||||| ||||||| ||||| Sbjct 21760 ACTCGATGATTTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCG 21701 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 || ||| |||||||||||| |||||| | || || || |||| ||| ||| Sbjct 21700 ATTTCTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCCT 21641 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || || || |||||| | ||||||| | || || | |||||||||| Sbjct 21640 CGAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTT 21581 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | |||||| || | |||| | ||||| |||||||| || | Sbjct 21580 CGTATTTCTCGAACAGGGCGCGGAACTCTTCGCCATAAACTTCGTGGAGGCCGGGGGCTT 21521 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||||| || || | |||||||||| | | | | || || ||| || || ||| Sbjct 21520 CGGCGGGGCAGAACAGGGGCCAGTCGCCGGCGGCCTCGACTCGCTCCATGAAGAGATCGG 21461 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||| || | | |||||||| || || ||| |||||||||||||||||||| Sbjct 21460 GGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGC 21401 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 ||||| || | || | || |||||||||||| ||||| |||||| || ||||| | Sbjct 21400 GAAGGTCCAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATCGCGAAGGCTC 21341 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | |||||| ||| || Sbjct 21340 CGGGACGCTTGTTGCCACC 21322 Score = 116 bits (128), Expect = 6e-20 Identities = 177/245 (72%), Gaps = 14/245 (6%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || | |||| | ||| ||||||| ||||||||||| Sbjct 22934 TGGTCGACGGTGAACTTGATCGCCCCGACGGCGGCCCGTGTGCGCAAGTAGTACATGCCC 22875 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 || || || || || ||| ||||| |||||||||||||| | || ||| ||| Sbjct 22874 GTTTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GTTGCGCCATCGTCG 22817 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||||| ||| | |||||||| Sbjct 22816 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCACCTCGGTCGGCG 22758 Query 2069428 GCCATGTC---GATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTT 2069483 | || ||| |||||| | ||| || | |||||| ||||||||| | | |||||| Sbjct 22757 GACAAGTCAATGATGGT----CTTTTGCGAGAGCTCCCAAACGGTCTTGTAGATGGCCTT 22702 Query 2069484 GAGAT 2069488 ||||| Sbjct 22701 GAGAT 22697 >seq11 Length=1812982 Score = 145 bits (160), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 615660 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 615719 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 615720 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 615776 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| |||||| Sbjct 615777 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAACATCG 615836 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 615837 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 615883 Score = 145 bits (160), Expect = 1e-28 Identities = 169/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 665911 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 665852 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 665851 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 665795 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| |||||| Sbjct 665794 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAACATCG 665735 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 665734 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 665688 Score = 127 bits (140), Expect = 3e-23 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 300057 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 299998 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| |||||||| || | ||| || ||||| |||| || ||| || | Sbjct 299997 AGGTTTGGATCTCTCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 299941 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| |||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 299940 ATGCCTCGGTGGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATAAGCATCG 299881 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || ||||| | ||| ||| Sbjct 299880 CCTTGTTCGAGATACCCGTGTCGGGGTGAACTTGCTTCAACACTTTG 299834 >seq33 Length=986392 Score = 105 bits (116), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 ||| || || ||| |||||| |||||||||||| ||||||||||||||||||||| Sbjct 95064 GAATCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGAC 95005 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAG---ACCCAGTGGACCGTGTCGGC 796292 |||| ||| |||| || |||||| ||||| | |||||| | |||| Sbjct 95004 GTGCGAGATGAAGTAGCGTTCGTCGGGCTTGAGCTTGTTATCCCAGTCATGCATGTCCTT 94945 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 | | ||| | ||| ||||||||||||||||| |||||||| || |||||| Sbjct 94944 GGACAAGTCCATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCTTTCTTGTAC 94893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242464141243