Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq36 143 3e-29 seq26 131 2e-25 seq33 114 2e-20 seq10 113 5e-20 >seq36 Length=474693 Score = 143 bits (158), Expect = 3e-29 Identities = 267/392 (68%), Gaps = 0/392 (0%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || || ||| ||| ||| || ||| || || || ||| | Sbjct 61705 CGCTTCTACCAAGCCTCGACCTCCGAGTTGTATGGCAAGGTCGTCGAGACCCCTCAATCC 61764 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || || ||||||||| | ||| | || ||| Sbjct 61765 GAGACGACGCCCTTCTACCCTCGTTCACCTTACGGAGTCGCCAAGTTGTACGCCTTCTGG 61824 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| ||| | |||||| Sbjct 61825 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCTTGTTCAAC 61884 Query 7412 CATGAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAA 7471 || || || ||| | || ||| |||||| || | ||||||| || | | || Sbjct 61885 CACGAGTCCCCGCGTCGTGGTCGTACCTTTGTGACGAGGAAGATTTCCCGAGCTGTCGCC 61944 Query 7472 CAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGAT 7531 | ||| | ||| || |||| | | | | | || ||| | | || | | ||| Sbjct 61945 GAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAACTTGGAGGCCAAGCGTGAT 62004 Query 7532 TGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC 7591 ||||| |||||| || || || || | ||||||| | ||||| || ||||| || Sbjct 62005 TGGGGACACGCGCGCGATTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACCCCC 62064 Query 7592 GACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 ||||| | ||| | || |||||||||||||| Sbjct 62065 GACGACTTTGTCCTCGCGACGGGTGAGACCCA 62096 >seq26 Length=1828681 Score = 131 bits (144), Expect = 2e-25 Identities = 510/797 (64%), Gaps = 15/797 (2%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| |||||||||| ||| |||| || || || | ||||| || |||||| || Sbjct 20963 ACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGT 21022 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | ||| || ||||| | | || | ||||| | || || |||||||| || | Sbjct 21023 CGTACAACCTCATGTCGGAGCGCTACTTTACCCACGCCTCGCCGACACTCTTCAACGCCG 21082 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 | || || || || | || |||||||| || | | ||||| || || ||| Sbjct 21083 GAACGCCTCACCCGCAGCTTTCGTCGTGCTTCCTGGTCACGATGAAGGATGATTCGATCG 21142 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 | || ||||| | || || | | ||| |||| ||||| ||| || || ||||| | Sbjct 21143 AAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCG 21202 Query 104469 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 104528 | || |||||| | | | || | ||| || || || || || | | Sbjct 21203 GTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAACGGCTACT 21262 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 | | || || | || ||||| || || | ||| || |||||||| || | |||| Sbjct 21263 CGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAATACCGCGCGCTACGTCGACCAAG 21322 Query 104589 CTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATA 104642 ||| ||||| ||| | |||| |||| || ||||| |||||||| || Sbjct 21323 GTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCTTGGCACGCCGACG 21379 Query 104643 TCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGA 104700 || | |||||||| || | || ||||| || | ||||| | |||| | || || Sbjct 21380 TCTTTGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCT--CGTGA 21437 Query 104701 TCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAA 104760 |||||||| || |||||||| || |||||||||||| || |||| |||| ||| | Sbjct 21438 TCTCTTCTTTGCGCTCTGGATCCCCGATCTCTTCATGGAGCGAGTCGAGGCCGCCGGCGA 21497 Query 104761 TTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTT 104820 ||| | || || || || | | | || || || ||| ||| | || || ||||| Sbjct 21498 CTGGCCCCTGTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTTTATGGCGAAGAGTT 21557 Query 104821 TGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGC 104880 ||||| | | || ||||| | || || || || | |||| | || || || Sbjct 21558 CCGCGCCCTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGC-GC 21616 Query 104881 CGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTT 104939 | | | ||| | || |||||| || | || ||| || || | || | |||||| | Sbjct 21617 AAAAGCTTTGGTACGCGATTCTCGAGGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCT 21676 Query 104940 ACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCA 104999 |||| |||||| ||| | || || |||||||| | || ||||||| || | Sbjct 21677 ACAAGGACGCCGCAAACAAGAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTCGA 21736 Query 105000 ATCTCTGTACAGAAATC 105016 | || || || |||||| Sbjct 21737 ACCTGTGCACCGAAATC 21753 >seq33 Length=986392 Score = 114 bits (126), Expect = 2e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || ||| || || || || | Sbjct 272638 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 272579 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| |||||||||| | ||| | || ||| Sbjct 272578 GAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGG 272519 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 272518 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 272459 Query 7412 CATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGAT 7455 || || || || | || || ||| ||||||||| | ||||| Sbjct 272458 CACGAGTCCCCCCGTCGTGGCCGCA-CCTTTGTCACCAGAAAGAT 272415 >seq10 Length=1588530 Score = 113 bits (124), Expect = 5e-20 Identities = 232/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 564736 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 564677 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || ||||| |||||| Sbjct 564676 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCTAAGATC 564617 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGT-TTGATGTG-AGCTGTGTGACAGAGGCATCGCGA 169336 | ||||| ||| ||||| ||| || ||| | | || | || | | || || || Sbjct 564616 TGCTTGA--TCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 564560 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || ||| || || | |||||||||||| |||| || ||||| ||||| | Sbjct 564559 ACGTTGAGTAGCTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACAGCC 564500 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| ||||| | ||| || || || || ||||| | |||||| || || || Sbjct 564499 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGTGTGCACTTG 564440 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 169491 || | | | |||||| || || |||||||| || Sbjct 564439 GACCCGTTCCT--CGTACCAGCGTTATTCGCATCTTC 564405 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || |||||| | | || | |||||||||||| ||||| |||||||| || |||| Sbjct 315634 TCAGGCTCCTTCGCCTCCATCTTTTGGCTCAAGAAACGAGGCCTCATGCCTGGCCTCTCT 315575 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 |||||||||||||| || || || ||||| || || || || || |||||| Sbjct 315574 TTCTCCAACGAGCTCATTTCGCGCGACGAAGGTCTTCATACCGAATTCGCGGTG 315521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260530241880