Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq26 118 3e-21 seq10 98.7 3e-15 seq27 96.9 1e-14 >seq26 Length=1828681 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1063122 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1063181 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || ||||| || || |||||||| |||||||| || | Sbjct 1063182 AATCTGCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 1063241 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || ||||||| || || | Sbjct 1063242 CTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCTGAAG 1063301 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || ||||| || ||||| Sbjct 1063302 ACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 1063356 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1063350 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1063409 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || ||||| || || |||||||| |||||||| || | Sbjct 1063410 AATCTGCGAGCGTACGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 1063469 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || ||||| || | || || || ||||||| || || | Sbjct 1063470 CTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACG 1063529 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || || || || ||||| Sbjct 1063530 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1063584 Score = 86.0 bits (94), Expect = 2e-11 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1063578 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1063637 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || || |||||||| | || ||||| | Sbjct 1063638 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGT 1063697 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || || || || |||| || || | Sbjct 1063698 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGACG 1063757 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || || || || ||||| Sbjct 1063758 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1063812 Score = 86.0 bits (94), Expect = 2e-11 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || || || || | Sbjct 1063806 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGT 1063865 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || ||||| || || || || || |||||||| | || ||||| | Sbjct 1063866 AGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATCAATCGCTGCTGGT 1063925 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || || || || |||| || || | Sbjct 1063926 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGACG 1063985 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| | || || || || || ||||| Sbjct 1063986 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 1064040 >seq10 Length=1588530 Score = 98.7 bits (108), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || ||||| | Sbjct 1350962 ACCACCACGCAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTGTAATCGGC 1351021 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 1351022 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGGGG 1351081 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 1351082 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1351141 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || || || || |||| Sbjct 1351142 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 1351188 >seq27 Length=880931 Score = 96.9 bits (106), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 |||||||| || | | || || | || || || ||||| ||||| || || ||||| Sbjct 150191 ATACCACCTCGGAGACGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCG 150132 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | | || || ||||| || || || || || |||||||| ||||||||||| || || Sbjct 150131 GCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGG 150072 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || ||||| || || || || || | || || || || |||| || || | || Sbjct 150071 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 150012 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || || | ||||| || || || || || || || || ||| Sbjct 150011 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGC 149964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253681674711