Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900013405.1_202016-12- 23] 37 sequences; 25,667,824 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq26 111 1e-19 seq10 105 5e-18 seq27 98.7 7e-16 >seq26 Length=1828681 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23602 TTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTT 23661 |||||| | ||||| || || || || ||||| || || || |||||||| ||||| || Sbjct 1305643 TTACTTCAGATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTC 1305584 Query 23662 GACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCG 23721 || ||| ||||||| |||| | | || ||||| ||||| || || | || Sbjct 1305583 GAGTCCTCGGACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCC 1305524 Query 23722 CCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 ||||| ||||| ||| | || ||||| ||||| ||||| || || | || || | | Sbjct 1305523 CCAGACCAACAACGTCTTATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCG 1305464 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 ||||||||||| ||||| ||||| || Sbjct 1305463 GATTACAACATTCAAAAGGAGTCGAC 1305438 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || |||||||| ||||| || || || || Sbjct 1063584 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 1063525 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || ||||| || Sbjct 1063524 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1063466 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1063465 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1063406 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1063405 CATCCAGAAGGAGTCGAC 1063388 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||| || || || || ||||| ||||| || || || || Sbjct 1064268 ATGCAGATCTTTGTTAAGACCCTGACTGGCAAGACCATCACACTCGAGGTCGAGTCTTCG 1064209 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| || || | || ||||| || Sbjct 1064208 GACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGACCA 1064150 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1064149 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1064090 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1064089 CATCCAGAAGGAGTCGAC 1064072 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || ||||| ||||| || || || | Sbjct 1063356 ATGCAAATCTTTGTCAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCA 1063297 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || ||||| || Sbjct 1063296 GACACGATTGACAACGTCAAGACCAAGA-TTCAAGACAAGGAGGGCATTCCCCCAGACCA 1063238 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| ||||| || || | || || | | |||||||| Sbjct 1063237 ACAACGTCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGTACGCTCGCAGATTACAA 1063178 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1063177 CATCCAGAAGGAGTCGAC 1063160 >seq10 Length=1588530 Score = 105 bits (116), Expect = 5e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 |||| || ||||| || ||||||||||| || || ||||| ||||| || || || | | Sbjct 1351188 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1351129 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| | || || | || || || | | ||||| ||||| | || ||||| || Sbjct 1351128 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAG 1351070 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||| || || || || | ||||| | | |||||||||| Sbjct 1351069 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 1351010 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 1351009 ATCCAAAAGGAGTCGAC 1350993 >seq27 Length=880931 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || ||||| || || || ||||| || |||||||| ||||| || || || | || Sbjct 149964 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 150023 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| | || || | || || || | | ||||| ||||| | || ||||| || | Sbjct 150024 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 150082 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| | | ||||||||||| Sbjct 150083 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACA 150142 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 150143 TCCAAAAGGAGTCGAC 150158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009447578796