Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq87 134 9e-27 seq44 105 4e-18 seq47 87.8 1e-12 >seq87 Length=1238431 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | || || ||||| |||||||||||||| Sbjct 436487 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGAG 436546 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| |||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 436547 AGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATGAGACGCTGTTGGTCTGGGGGA 436606 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | ||| ||||| Sbjct 436607 ATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCGACC 436666 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| ||||| || || |||||||| ||||| Sbjct 436667 TCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCAT 436713 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | |||||||| ||| | || ||| ||||| |||||||||||||| Sbjct 677933 TCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGA 677992 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || |||| || | |||||| || ||||| || | |||||||||||| || Sbjct 677993 GAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGAGG 678052 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | |||| || | || ||||| Sbjct 678053 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGAC 678112 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || |||||||| || || || || || || ||||| Sbjct 678113 CTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 678160 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | || ||| ||||| |||||||||||||| Sbjct 678162 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 678221 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | |||||| || ||||| || | |||||||||||| ||| Sbjct 678222 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 678281 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | |||| || | || ||||| Sbjct 678282 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACC 678341 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || |||||||| || || || || || || ||||| Sbjct 678342 TCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 678388 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | || ||| ||||| |||||||||||||| Sbjct 678390 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 678449 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | |||||| || ||||| || | |||||||||||| ||| Sbjct 678450 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 678509 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 678510 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 678569 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||| || ||||| || | ||| || || || || |||||| Sbjct 678570 TCGAGCGTGATCGTCTTGCCTGTCAAAGTCTTGACGAAAATTTGCATC 678617 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| |||||||| || | ||| ||| |||| Sbjct 436730 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCGTCC 436789 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || | ||||||||||| ||| | || ||||||||| Sbjct 436790 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 436849 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | |||| || | || ||||| || | ||||| || Sbjct 436850 TGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATCGTC 436909 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| ||||| ||||| || ||||| |||||| Sbjct 436910 TTGCCAGTGAGCGTTTTAACGAAGATTTGCATC 436942 >seq44 Length=1311234 Score = 105 bits (116), Expect = 4e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| | || || || || ||||||||||| | Sbjct 308780 CCACCGCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCG 308721 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || ||||| || ||||||||| ||| Sbjct 308720 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGGG 308661 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | |||| |||| ||| ||||| Sbjct 308660 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 308601 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCA 34388 || | |||||||| ||||| ||||| || || || ||||| |||| Sbjct 308600 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 308555 >seq47 Length=302882 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| | || ||| | || || | ||||||||| || || Sbjct 149714 TCCTTTTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 149655 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| | |||| | || |||||||| ||||| ||| | | Sbjct 149654 ATGAGACGTTGCTGGTCTGGCGGG-ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTT 149596 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| |||| ||| ||||| || | ||||| || ||||| || ||||| || || Sbjct 149595 GTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGAC 149536 Query 34378 AAAGATCTGC 34387 ||||| ||| Sbjct 149535 GAAGATTTGC 149526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071460570720