Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq45 248 8e-61 seq87 125 6e-24 seq47 113 4e-20 seq44 105 6e-18 seq42 89.7 5e-13 >seq45 Length=1063883 Score = 248 bits (274), Expect = 8e-61 Identities = 568/847 (67%), Gaps = 6/847 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||||||||| | ||||| ||||| |||||| | || |||||| | ||||| Sbjct 40012 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 39953 Query 23081 GTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTTCGATTGC 23138 || || || || | || |||| |||||||| | || | ||||| | ||||| | |||| Sbjct 39952 GTGCAAAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGC 39894 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 | | ||||||||||||||| |||| |||| || |||||||| | |||| ||||| Sbjct 39893 A-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCAT 39835 Query 23199 GCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGG 23257 ||| | | || ||| | | |||| | | | ||| || | ||||| || | | Sbjct 39834 ACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCG 39776 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 |||| || ||| || | ||||| ||| |||||||| | || || || Sbjct 39775 AACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAG 39716 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 | ||| ||| | | || || || ||| || ||||| || ||||| ||| Sbjct 39715 AAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGA 39656 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 || |||| || || || ||||| || ||||| |||||| |||||| | |||| Sbjct 39655 GCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGG 39596 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 || || || ||||| || ||||||||||||||||| | || || || || || | ||| Sbjct 39595 AACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTG 39536 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||| || || |||||||| || || ||||||||||| || | ||||| || |||| Sbjct 39535 TTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATG 39476 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| || ||| ||| || | || || | || || | |||||| | | Sbjct 39475 CCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATG 39416 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 ||||| || || ||| | | || || || | |||||| || || ||||||||| Sbjct 39415 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAG 39356 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||| || || || || || ||| ||||| |||||| || || | |||| | Sbjct 39355 ATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGA 39296 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 ||||| |||| ||| || ||||| |||||| || ||||| | | ||||| | Sbjct 39295 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAG 39236 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 ||||||| | | | || || ||||| | ||||| || |||| |||||| ||||| Sbjct 39235 TTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATG 39176 Query 23858 ATCATGT 23864 | ||||| Sbjct 39175 AGCATGT 39169 Score = 109 bits (120), Expect = 5e-19 Identities = 114/149 (77%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591 || || |||||| ||||| ||||||||||| ||||| ||| |||||||| | | Sbjct 40519 CCGAGGATCTGACTCGTCGACGCGGTCGGCATTGGCGCGCACACGAGCGAGTTGCGGAGA 40460 Query 22592 CCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACA 22651 |||||||||| ||| || ||||||| |||||||||||||||||| ||| |||||| Sbjct 40459 CCGTGCTTTGCAATCTTCTCCTTGAGCTCGGACCAGTCCCACAGATCGCTCGGGGTCACA 40400 Query 22652 TTGTCCCACATATCGTATTGCAACACGCC 22680 |||||| ||||| |||||| |||| Sbjct 40399 ---CCCCACAAGTCGTACTGCAACTCGCC 40374 >seq87 Length=1238431 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||||||||| |||||||| |||| || || | || Sbjct 678616 ATGCAAATTTTCGTCAAGACTTTGACAGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 678557 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 678556 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 678497 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| | || | ||| || ||| Sbjct 678496 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 678437 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || || |||| || | || | ||||||| Sbjct 678436 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 678388 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| ||||| || |||| || || |||| Sbjct 436485 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 436426 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | ||||||| ||| | || || ||||| Sbjct 436425 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 436367 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || ||||||||||| ||| | || ||| | || | |||||| || Sbjct 436366 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 436307 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| |||||| |||| || Sbjct 436306 CATTCAGAAGGAGTCGACGCTTCATTTGGTGCT 436274 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 678388 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 678329 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 678328 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 678269 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| | || | ||| || ||| Sbjct 678268 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 678209 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| || || |||| || | || | ||||||| Sbjct 678208 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 678160 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 678160 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 678101 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 678100 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 678041 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || |||||||| || ||| | || ||| | || | ||| || ||| Sbjct 678040 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 677981 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || |||||||| || || |||| || Sbjct 677980 ATTCAGAAGGAATCGACGCTGCACTTGGTGCT 677949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || ||||| ||||||||| |||| || || | || Sbjct 436941 ATGCAAATCTTCGTTAAAACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGTCATCA 436882 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | ||||||| ||| | || || ||||| Sbjct 436881 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 436823 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| ||| | || ||| || | ||||| || Sbjct 436822 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGATTACAA 436763 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| || || |||| ||| | || | || |||| Sbjct 436762 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTCCGTGGTGGTA 436713 >seq47 Length=302882 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 || |||||| ||||| |||||||| || ||||| ||||||||| |||| || || |||| Sbjct 149523 CAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTC 149582 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | |||||||||||| | ||||| |||| Sbjct 149583 CGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACC 149641 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| ||||| || || || ||||| ||| | || || ||| | || || | Sbjct 149642 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACA 149701 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || ||||| || || |||| || Sbjct 149702 ACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 149735 >seq44 Length=1311234 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| ||||| ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 308555 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 308614 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | || ||||||||| Sbjct 308615 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCCGACCAG 308673 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || ||| | || || ||| Sbjct 308674 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 308733 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| || || |||| || Sbjct 308734 ATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 308765 >seq42 Length=296686 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| |||||||||| | || |||| || |||||| ||| |||||| | ||||| Sbjct 243553 ATCTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 243494 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || ||| ||| | | ||||| | || | | ||||| Sbjct 243493 GGCAACGACCTCCACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 243434 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || ||||||||||| || ||||| |||| || |||||| ||||||| || Sbjct 243433 CACGTGCTCGCCTTTTTCGCCGCTTCGGATGGGGTTGTGAATGAGAATCTGGTCGAGAGG 243374 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 || ||| || ||||| | |||||||| |||||||| || ||||| Sbjct 243373 TTCTCAAGCGAGGTGCAGTCCGCCGAGGCGAGGTGCTTTTATGGGTTTCA 243324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765636625040