Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq45 248 8e-61
seq87 125 6e-24
seq47 113 4e-20
seq44 105 6e-18
seq42 89.7 5e-13
>seq45
Length=1063883
Score = 248 bits (274), Expect = 8e-61
Identities = 568/847 (67%), Gaps = 6/847 (1%)
Strand=Plus/Minus
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
||||||||||| | ||||| ||||| |||||| | || |||||| | |||||
Sbjct 40012 GCGATCGAGGCCAAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCA 39953
Query 23081 GTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTTCGATTGC 23138
|| || || || | || |||| |||||||| | || | ||||| | ||||| | ||||
Sbjct 39952 GTGCAAAGGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGC 39894
Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198
| | ||||||||||||||| |||| |||| || |||||||| | |||| |||||
Sbjct 39893 A-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCAT 39835
Query 23199 GCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTACTTTTGG 23257
||| | | || ||| | | |||| | | | ||| || | ||||| || | |
Sbjct 39834 ACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCG 39776
Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317
|||| || ||| || | ||||| ||| |||||||| | || || ||
Sbjct 39775 AACAAGACGCGAAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAG 39716
Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377
| ||| ||| | | || || || ||| || ||||| || ||||| |||
Sbjct 39715 AAGAGGGGCCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGA 39656
Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437
|| |||| || || || ||||| || ||||| |||||| |||||| | ||||
Sbjct 39655 GCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGG 39596
Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497
|| || || ||||| || ||||||||||||||||| | || || || || || | |||
Sbjct 39595 AACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTG 39536
Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557
||||| || || |||||||| || || ||||||||||| || | ||||| || ||||
Sbjct 39535 TTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATG 39476
Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617
||||| || ||| ||| || | || || | || || | |||||| | |
Sbjct 39475 CCGTTCGAGTAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATG 39416
Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677
||||| || || ||| | | || || || | |||||| || || |||||||||
Sbjct 39415 CTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAG 39356
Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737
||||| || || || || || ||| ||||| |||||| || || | |||| |
Sbjct 39355 ATGCCTTCAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGA 39296
Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797
||||| |||| ||| || ||||| |||||| || ||||| | | ||||| |
Sbjct 39295 GGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAG 39236
Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857
||||||| | | | || || ||||| | ||||| || |||| |||||| |||||
Sbjct 39235 TTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATG 39176
Query 23858 ATCATGT 23864
| |||||
Sbjct 39175 AGCATGT 39169
Score = 109 bits (120), Expect = 5e-19
Identities = 114/149 (77%), Gaps = 3/149 (2%)
Strand=Plus/Minus
Query 22532 CCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAG 22591
|| || |||||| ||||| ||||||||||| ||||| ||| |||||||| | |
Sbjct 40519 CCGAGGATCTGACTCGTCGACGCGGTCGGCATTGGCGCGCACACGAGCGAGTTGCGGAGA 40460
Query 22592 CCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACA 22651
|||||||||| ||| || ||||||| |||||||||||||||||| ||| ||||||
Sbjct 40459 CCGTGCTTTGCAATCTTCTCCTTGAGCTCGGACCAGTCCCACAGATCGCTCGGGGTCACA 40400
Query 22652 TTGTCCCACATATCGTATTGCAACACGCC 22680
|||||| ||||| |||||| ||||
Sbjct 40399 ---CCCCACAAGTCGTACTGCAACTCGCC 40374
>seq87
Length=1238431
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||| |||||||||| |||||||| |||| || || | ||
Sbjct 678616 ATGCAAATTTTCGTCAAGACTTTGACAGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 678557
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || |||||||||
Sbjct 678556 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 678497
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || |||||||| || ||| | || ||| | || | ||| || |||
Sbjct 678496 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 678437
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| || || |||| || | || | |||||||
Sbjct 678436 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 678388
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| ||||| ||||| || |||| || || ||||
Sbjct 436485 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 436426
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | | ||||||| ||| | || || |||||
Sbjct 436425 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 436367
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || ||||||||||| ||| | || ||| | || | |||||| ||
Sbjct 436366 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 436307
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || || ||||| |||||| |||| ||
Sbjct 436306 CATTCAGAAGGAGTCGACGCTTCATTTGGTGCT 436274
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | ||
Sbjct 678388 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 678329
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || |||||||||
Sbjct 678328 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 678269
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || |||||||| || ||| | || ||| | || | ||| || |||
Sbjct 678268 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 678209
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || |||||||| || || |||| || | || | |||||||
Sbjct 678208 ATTCAGAAGGAATCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGGTA 678160
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| ||||| |||||||| |||| || || | ||
Sbjct 678160 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCA 678101
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| ||| | || |||||||||
Sbjct 678100 GACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 678041
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || |||||||| || ||| | || ||| | || | ||| || |||
Sbjct 678040 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 677981
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || |||||||| || || |||| ||
Sbjct 677980 ATTCAGAAGGAATCGACGCTGCACTTGGTGCT 677949
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || || || || ||||| ||||||||| |||| || || | ||
Sbjct 436941 ATGCAAATCTTCGTTAAAACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGTCATCA 436882
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | | ||||||| ||| | || || |||||
Sbjct 436881 GACACGATCGACAACGTCAAGACCAAGATTCAAG-ACAAGGAGGGCATTCCCCCAGACCA 436823
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||||||||| ||| | || ||| || | ||||| ||
Sbjct 436822 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCGGATTACAA 436763
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || ||||| || || |||| ||| | || | || ||||
Sbjct 436762 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTCCGTGGTGGTA 436713
>seq47
Length=302882
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|| |||||| ||||| |||||||| || ||||| ||||||||| |||| || || ||||
Sbjct 149523 CAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTC 149582
Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
||||| |||| | ||||| || ||| | |||||||||||| | ||||| ||||
Sbjct 149583 CGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACC 149641
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
|||| ||||| || || || ||||| ||| | || || ||| | || || |
Sbjct 149642 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACA 149701
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||| ||||| || ||||| || || |||| ||
Sbjct 149702 ACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 149735
>seq44
Length=1311234
Score = 105 bits (116), Expect = 6e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253
||||||| ||||| ||||| || || ||||| || |||||| |||| || || ||||||
Sbjct 308555 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 308614
Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
||| |||| | ||||| || ||| | |||||||||||| | || |||||||||
Sbjct 308615 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCCGACCAG 308673
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| ||||| || || || ||||| ||| | || || ||| | || || |||
Sbjct 308674 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAAC 308733
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| || ||||| || || |||| ||
Sbjct 308734 ATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 308765
>seq42
Length=296686
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/230 (69%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| |||||||||| | || |||| || |||||| ||| |||||| | |||||
Sbjct 243553 ATCTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 243494
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| || || ||| ||| | | ||||| | || | | |||||
Sbjct 243493 GGCAACGACCTCCACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 243434
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
|||||| | || ||||||||||| || ||||| |||| || |||||| ||||||| ||
Sbjct 243433 CACGTGCTCGCCTTTTTCGCCGCTTCGGATGGGGTTGTGAATGAGAATCTGGTCGAGAGG 243374
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
|| ||| || ||||| | |||||||| |||||||| || |||||
Sbjct 243373 TTCTCAAGCGAGGTGCAGTCCGCCGAGGCGAGGTGCTTTTATGGGTTTCA 243324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765636625040
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