Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq45 111 2e-19
>seq45
Length=1063883
Score = 111 bits (122), Expect = 2e-19
Identities = 416/646 (64%), Gaps = 10/646 (2%)
Strand=Plus/Minus
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
||| || ||| | ||| || || | ||| |||||||| |||||||| ||||| | ||
Sbjct 39707 CCAGTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAGCAAAGAA 39648
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | |||||| || || ||||| ||| || |||||| | |
Sbjct 39647 GAGATCACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAA 39588
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| || | |||||||| || | ||| || || | |||| || || ||||| || ||
Sbjct 39587 GACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 39528
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
|| || | ||| | |||||||| || || || | | ||| || | || ||||| ||
Sbjct 39527 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGA 39468
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547
||||| || |||| ||| ||| || | || || || || || | |||
Sbjct 39467 GTAGCCATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACC 39408
Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTGTCATAGATGCCTT 63606
|| || || || | || ||||| | ||||| ||| || | ||||| ||||||||||
Sbjct 39407 GATACCACCGGCGGTCTTGGAGATGAGCGCGCA-CGTCTTGAGTGTGTCGTAGATGCCTT 39349
Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTC 63666
| || ||| || |||| | | || |||||| || | || | ||| ||||
Sbjct 39348 CAATCGAATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGAGGCGTTC 39289
Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726
| || || || | || || || ||||| || || | || || | | |||||||
Sbjct 39288 CGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAAGTTGTACG 39229
Query 63727 TCT-CAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATTAAC 63782
|| ||| | | || || || ||| || || || || ||||||||||| | |
Sbjct 39228 ACTGCAAGA-CGCGCTCGATGTC---GTGACCGTGGATGCCGACGGCGACACGCATGAGC 39173
Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842
|||||||| || | ||| | | ||| || || | ||||||||| || |
Sbjct 39172 ATGTGCTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGC 39113
Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63888
|| || || ||||| |||||||| || || || ||||| ||||
Sbjct 39112 GTCTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATAA 39067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816521437360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |