Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq87 105 7e-18 >seq87 Length=1238431 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || ||||| | ||||| || || || | || ||||| || || |||||||| ||| Sbjct 677931 TGTCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCG 677990 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| ||| ||||| || |||||||| |||||| || ||||| |||||| Sbjct 677991 GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGA 678050 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || ||||| || || || | | || | |||||| | || || Sbjct 678051 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCG 678110 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || | |||||||||||||| || || ||||| ||||||||| Sbjct 678111 ACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCATA 678161 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | || || || | || ||||| || || |||||||| ||| Sbjct 678162 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCGGAG 678221 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| || |||||||| |||||| || ||||| ||||| || Sbjct 678222 AGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGGGGA 678281 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || ||||| || || || | | || | |||||| | || || || Sbjct 678282 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCGACC 678341 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| || || ||||| ||||||||| Sbjct 678342 TCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCATA 678389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | || ||||||| || || || || || |||||||||||| Sbjct 436256 TGACCACCACGAAGACGGAGCACCAAATGAAGCGTCGACTCCTTCTGAATGTTGTAATCG 436315 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| ||| ||||| || || ||||| |||||| || || || || || Sbjct 436316 GAGAGCGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCTGGG 436375 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| || ||||| ||| || || | | || | |||||| | | || Sbjct 436376 GGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGTCTGACGACTCG 436435 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || | |||||||||||||| || || ||||| ||||||||| Sbjct 436436 ACCTCGAGCGTAATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCATA 436486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013531737840