Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq45 105 1e-17 seq89 87.8 3e-12 >seq45 Length=1063883 Score = 105 bits (116), Expect = 1e-17 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||| ||||||||| | || ||||| | |||||| || | |||||| || Sbjct 40907 ATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACCATTATCGATCTGTCCGCCGACCGA 40966 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || |||||||||| |||||| |||| | || ||| ||||||| | | | Sbjct 40967 GGTGCCTTCATTGACCAGTCGCAATCGCTCAACATCCAC-TTGTCGAGCCCGAC-AATGG 41024 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 || | | || ||||| ||||| |||| ||||| || || |||||||||||||||| Sbjct 41025 CGCAGCTCACGTCGATGCACTTCTACGGTTGGAAGCGAGGACTGAAGACGGGCATGTACT 41084 Query 98215 A 98215 | Sbjct 41085 A 41085 Score = 100 bits (110), Expect = 4e-16 Identities = 323/496 (65%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || || || || | || ||||| | || || |||||||| ||| Sbjct 39525 CAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGAC 39584 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | ||||| ||| ||| || || | || || | || Sbjct 39585 GTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGTGAT 39644 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || | ||| |||||| | || ||| | |||||| |||| ||| | | || ||| || Sbjct 39645 CTCTTCTTTGCTCTCTGGATTCCCGATCTCTTCATGGAGCGTGTCGAGGCCGCCGGCGAC 39704 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| ||| | ||||||| | | ||||| || ||| || |||||||||||| Sbjct 39705 TGGCCCCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAGTTT 39764 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATGCACG 97174 | | || | | ||||| | |||||||| | | |||||| || || | Sbjct 39765 CGCGTCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGA-TCCCCGCGCA 39823 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 | | || ||| | || || | || ||||| || || || | |||| ||| ||||| Sbjct 39824 AAAGCTTTGGTATGCGATTCTCGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCTA 39883 Query 97235 CAAGGATACCGTGAATCGCAACAGC-AACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||| | | || | || | | |||||| || | ||||| |||||| || | Sbjct 39884 CAAGGACGCTG-CAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTCGA 39942 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| ||||| | |||||| | | ||||||||| || |||||| ||| Sbjct 39943 ACCTTTGCACTGAAATCATCGAGTACTCGGCGCCGGACGAGTGCGCCGTTTGCAACTTGG 40002 Query 97354 CATCGGTCAATCTGCC 97369 | ||| || | |||| Sbjct 40003 CCTCGATCGCTTTGCC 40018 >seq89 Length=907297 Score = 87.8 bits (96), Expect = 3e-12 Identities = 238/356 (67%), Gaps = 14/356 (4%) Strand=Plus/Minus Query 69893 CTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGG 69952 || || || ||||||||||||| |||||| ||| |||||||||| ||| | ||| Sbjct 230150 CTCCCCCTTTTGACGACCAAGAAGGTCTTTACGCGAGGCATCATCGAGGAACTCCTTTGG 230091 Query 69953 ATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAG 70011 | || |||||||||| | | ||| | || |||| ||||| || | |||||| Sbjct 230090 TTCGTTCGCGGATCGACCGACTCGAAATTGTTGT-CCGACAAGGGGGTCAAGATTTGGGA 230032 Query 70012 CGGCAACAGTAGTCGAAGCG--TTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGC 70069 || || | |||| | ||||||| | | || || | | || ||||||| Sbjct 230031 TGGGAATGGA--TCGAGACAATTTTTGGACAAGGTTGGGTTGGCGCATAGGGAAGAGGGG 229974 Query 70070 GATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTG- 70128 ||| |||| || || ||||| |||||||||||||| | ||| | ||||| ||| | Sbjct 229973 GATTTGGGACCGGTTTACGGGTTCCAGTGGAGGCATTTTGGCGCAGAGTAT-AGGACGGC 229915 Query 70129 CGAGACAGACTATTCGGGTCAGGGTGTTGATCAAT---TGCAGACAATCATTGACACTCT 70185 | || || ||| ||| |||| || ||||||| ||||| ||| | | | | Sbjct 229914 CAAGGATGATTATCAGGGGGAGGGGGTCGATCAATTGATGCAGGTTGTCA---AGAATAT 229858 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 |||| || || || |||||||||||| | || | | ||||| || |||| || Sbjct 229857 CAAGGAGAACCCCACCGATAGGAGGATCATCTTGAGTGCTTGGAACCCGGCAGGTT 229802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057930936120