Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq87 104 2e-17 >seq87 Length=1238431 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || || ||||| || | ||| ||||| | ||| | ||||| Sbjct 436732 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTGCGGCCGTCCTC 436791 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| |||| ||||| ||||| ||||| || || ||||| | Sbjct 436792 GAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 436851 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||||||| | ||| ||||| | ||||| || | ||||| || || Sbjct 436852 AATCTTGGTCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCGAGGGTGATCGTCTT 436911 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| || ||||| ||||| Sbjct 436912 GCCAGTGAGCGTTTTAACGAAGATTTGCAT 436941 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||| | |||| ||||||||||| || |||||||| || | ||| || ||| Sbjct 677933 TCCGCCTCGGAGACGCAGCACCAAGTGCAGCGTCGATTCCTTCTGAATGTTGTAGTCG-- 677990 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | || || || ||||| ||||| || || | ||||| |||| ||||| || ||| Sbjct 677991 GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCGGGA 678050 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 ||||| || || ||||| | || || |||||||| | ||| ||||| | | ||| Sbjct 678051 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCTGAGGACTCG 678110 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||| || || || || || || || || || || ||||| Sbjct 678111 ACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCAT 678160 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | || | ||||||||||| || || ||||| || | | Sbjct 436475 AAAATTTGCATACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGAATG 436534 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | || || || ||||||| ||| || || ||||||| | | | Sbjct 436535 TTGTAGTCG--GAGAGCGTGCGACCGTCCTCCAACTGCTTGCCCGCAAAGATGAGACGCT 436592 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || ||||| ||||| || || ||||| | ||| || | ||||||| | ||| |||| Sbjct 436593 GTTGGTCTGGGGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATCGTGT 436652 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||||| || | |||||| || || ||||| || || || |||||||| |||| Sbjct 436653 CTGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTGAGCGTCTTGACAAAGATTTGCA 436712 Query 95007 T 95007 | Sbjct 436713 T 436713 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | || | ||||||||||| || |||||||| || | | Sbjct 678378 AAAATTTGCATACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATG 678437 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | || || || ||||| ||||| || || | ||||| |||| | Sbjct 678438 TTGTAGTCG--GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCT 678495 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || || ||||| || || ||||| | || || ||||||||| | ||| |||| Sbjct 678496 GCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGT 678555 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | |||||| || || || || | ||| || || || || |||| Sbjct 678556 CCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCTGTCAAAGTCTTGACGAAAATTTGCA 678615 Query 95007 T 95007 | Sbjct 678616 T 678616 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| | || | ||||||||||| || |||||||| || | | Sbjct 678150 AAAATTTGCATACCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGATTCCTTCTGAATG 678209 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | || || || ||||| ||||| || || | ||||| |||| | Sbjct 678210 TTGTAGTCG--GAGAGCGTGCGACCGTCCTCGAGCTGCTTACCAGCGAAGATCAATCGCT 678267 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || || ||||| || || ||||| | || || |||||||| | ||| |||| Sbjct 678268 GCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGT 678327 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | ||||| || | |||||| || || || || || || || || || || |||| Sbjct 678328 CTGAGGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGCGTCTTGACGAAAATTTGCA 678387 Query 95007 T 95007 | Sbjct 678388 T 678388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290432301320