Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq87 116 3e-21
seq44 107 2e-18
seq47 100 2e-16
>seq87
Length=1238431
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||||| || | || || |||| || ||||||||
Sbjct 436485 ATGCAAATTTTCGTCAAGACGCTGACCGGCAAGACGATTACGCTCGAGGTCGAGTCGTCA 436426
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 436425 GACACGATCGACAACGTCAAGACCAAGATTCAA-GACAAGGAGGGCATTCCCCCAGACCA 436367
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || || || ||||| || | || || | |||||| | |||||||||
Sbjct 436366 ACAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACGCTCTCCGATTACAA 436307
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || ||||| ||||| |||||
Sbjct 436306 CATTCAGAAGGAGTCGACGCTTCATTTGGTGCT 436274
Score = 116 bits (128), Expect = 3e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || || | ||||| |||| || ||||||||
Sbjct 436713 ATGCAAATCTTTGTCAAGACGCTCACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCA 436654
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | ||| | || | ||| ||||| || || ||||| || |||||
Sbjct 436653 GACACGATCGACAACGTCAAGACCAAGATTCAA-GACAAGGAGGGCATTCCCCCAGACCA 436595
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || ||||| ||||| || || || || | |||||| | ||| |||||
Sbjct 436594 ACAGCGTCTCATCTTTGCGGGCAAGCAGTTGGAGGACGGTCGCACGCTCTCCGACTACAA 436535
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || ||||| || || |||||
Sbjct 436534 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCT 436502
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| || || | ||||| |||| || ||||| ||
Sbjct 678616 ATGCAAATTTTCGTCAAGACTTTGACAGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 678557
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || ||||| || |||||
Sbjct 678556 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 678497
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || || || | || || | |||||| | ||| |||||
Sbjct 678496 CAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGCACGCTCTCCGACTACAAC 678437
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || |||||
Sbjct 678436 ATTCAGAAGGAATCGACGCTGCACTTGGTGCT 678405
>seq44
Length=1311234
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056
|| ||||||| || || ||||| | || || || ||||||| |||| || |||||||
Sbjct 308552 CAGTGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGT 308611
Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
| ||||| ||||| | ||| || ||| ||||| ||||| || || || ||||
Sbjct 308612 CCGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCCGACC 308671
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | || ||||||||||| || | || |||| |||||| | | || ||||
Sbjct 308672 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACA 308731
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || ||||| || || || || || || |||||
Sbjct 308732 ACATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 308765
>seq47
Length=302882
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060
|||||| || || |||||| | || || || | ||||| |||| || |||||||| ||
Sbjct 149526 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 149585
Query 25061 CACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACA 25120
||| ||||| | ||| || ||| ||||| ||||| || || || ||||| ||
Sbjct 149586 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 149645
Query 25121 GCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATAT 25180
|| | || ||||||||||| || | || |||| |||||| | | || ||||| ||
Sbjct 149646 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTCGCGGACTACAACAT 149705
Query 25181 TCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || ||
Sbjct 149706 CCAAAAGGAGTCGACCCTCCACTTGGTCCT 149735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327276477655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |