Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq117 123 5e-23 seq56 95.1 2e-14 seq44 93.3 9e-14 >seq117 Length=2006698 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| ||||| |||||||| ||| | ||||| || |||| |||||| Sbjct 484532 GGTATCGTCGGCCCCAACGGTGCCGGTAAGTCGACCTTGATCAAGCTCTTGACGGGCGAG 484591 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || || ||||||||||||| |||| | || |||||||| Sbjct 484592 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCATCCCAACTTGCGTGTCGCGTACGTCGCC 484651 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| ||| Sbjct 484652 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAG 484711 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 484712 TGGCGTTA 484719 >seq56 Length=1567404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || | | || |||||||| | Sbjct 441061 GGCTCGCTCTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATTCTGTTCGAG 441120 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| |||||| |||||| Sbjct 441121 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 441180 Query 279819 CTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 || | | |||||| || ||| ||| || | ||| |||| ||||| ||||||| Sbjct 441181 CTCGAGAACTACCTCAC--GTCGTTGACGACGTGCACGTCCATCATCGTCTCGCACGACT 441238 Query 279877 CTGGCTTCCT 279886 | |||||||| Sbjct 441239 CGGGCTTCCT 441248 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || ||||| |||||||||||||| || | | || |||||||| | Sbjct 466424 GGCTCGCTCTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATTCTGTTCGAG 466483 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| | || |||| || ||||| || |||||| ||||| |||||| |||||| Sbjct 466484 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 466543 Query 279819 CTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876 || | | |||||| || ||| ||| || | ||| |||| ||||| ||||||| Sbjct 466544 CTCGAGAACTACCTCAC--GTCGTTGACGACGTGCACGTCCATCATCGTCTCGCACGACT 466601 Query 279877 CTGGCTTCCT 279886 | |||||||| Sbjct 466602 CGGGCTTCCT 466611 >seq44 Length=1311234 Score = 93.3 bits (102), Expect = 9e-14 Identities = 194/280 (69%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| |||||| |||| || ||||| || || |||| || | ||||| || Sbjct 1115064 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTGTCGGGTCTGGCT 1115005 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | |||||| |||||||| | || || ||| ||||||||||||| Sbjct 1115004 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCCTTGCGAGGAAAGTTGCTCAACGTGCGT 1114945 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || || ||| ||| || | || | ||||| |||||| || |||||||| ||| Sbjct 1114944 GAAGCGGCGG--GCAAGGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCT 1114887 Query 218015 TGGGTCTTCAGGTTGG-AAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGT 218072 ||||||| ||| || |||| | |||| || | || | || || ||||| ||| | Sbjct 1114886 TGGGTCTGCAGCAGGGTAAAGTC-TACACTGACGTCGAC-TCGCTCCGTTACGGCAAGCT 1114829 Query 218073 CATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATT 218112 |||| | ||| | ||| ||| || || || |||||| Sbjct 1114828 CATGATCATGGCCGATCAGGATCACGATGGATCGCACATT 1114789 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||| Sbjct 992715 ATCGCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCG 992774 Query 142561 AGCCCCACATCGGGC 142575 |||||| |||||||| Sbjct 992775 AGCCCCGCATCGGGC 992789 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 983962 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 983903 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 983902 CCCGCATCGGGC 983891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834995825217