Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12-
23] 137 sequences; 28,906,851 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq117 123 5e-23
seq56 95.1 2e-14
seq44 93.3 9e-14
>seq117
Length=2006698
Score = 123 bits (136), Expect = 5e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || | || ||||| ||||| |||||||| ||| | ||||| || |||| ||||||
Sbjct 484532 GGTATCGTCGGCCCCAACGGTGCCGGTAAGTCGACCTTGATCAAGCTCTTGACGGGCGAG 484591
Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
||| | || || || || ||||||||||||| |||| | || ||||||||
Sbjct 484592 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCATCCCAACTTGCGTGTCGCGTACGTCGCC 484651
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349
|| ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| |||
Sbjct 484652 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAG 484711
Query 280350 TGGCGCTA 280357
||||| ||
Sbjct 484712 TGGCGTTA 484719
>seq56
Length=1567404
Score = 95.1 bits (104), Expect = 2e-14
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || || || ||||| |||||||||||||| || | | || |||||||| |
Sbjct 441061 GGCTCGCTCTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATTCTGTTCGAG 441120
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| | || |||| || ||||| || |||||| ||||| |||||| ||||||
Sbjct 441121 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 441180
Query 279819 CTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876
|| | | |||||| || ||| ||| || | ||| |||| ||||| |||||||
Sbjct 441181 CTCGAGAACTACCTCAC--GTCGTTGACGACGTGCACGTCCATCATCGTCTCGCACGACT 441238
Query 279877 CTGGCTTCCT 279886
| ||||||||
Sbjct 441239 CGGGCTTCCT 441248
Score = 95.1 bits (104), Expect = 2e-14
Identities = 136/190 (72%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|| || || || ||||| |||||||||||||| || | | || |||||||| |
Sbjct 466424 GGCTCGCTCTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCCATTCTGTTCGAG 466483
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| | || |||| || ||||| || |||||| ||||| |||||| ||||||
Sbjct 466484 GCCGATATTCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 466543
Query 279819 CTAGTGTCCTACCTAACCAGTC--TGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACT 279876
|| | | |||||| || ||| ||| || | ||| |||| ||||| |||||||
Sbjct 466544 CTCGAGAACTACCTCAC--GTCGTTGACGACGTGCACGTCCATCATCGTCTCGCACGACT 466601
Query 279877 CTGGCTTCCT 279886
| ||||||||
Sbjct 466602 CGGGCTTCCT 466611
>seq44
Length=1311234
Score = 93.3 bits (102), Expect = 9e-14
Identities = 194/280 (69%), Gaps = 8/280 (3%)
Strand=Plus/Minus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| |||||| |||| || ||||| || || |||| || | ||||| ||
Sbjct 1115064 TGCACGCTCATCTTGACCGAAGGAGATTCCGCCAAGGCGCTCGCCGTGTCGGGTCTGGCT 1115005
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | |||||| |||||||| | || || ||| |||||||||||||
Sbjct 1115004 GTCGTCGGTCGAGACAACTATGGTGTCTTCCCCTTGCGAGGAAAGTTGCTCAACGTGCGT 1114945
Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014
|| || ||| ||| || | || | ||||| |||||| || |||||||| |||
Sbjct 1114944 GAAGCGGCGG--GCAAGGCCCTCCTCGACAATGCCGAGATTCAAGCGATCAAGCAGATCT 1114887
Query 218015 TGGGTCTTCAGGTTGG-AAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCTGT 218072
||||||| ||| || |||| | |||| || | || | || || ||||| ||| |
Sbjct 1114886 TGGGTCTGCAGCAGGGTAAAGTC-TACACTGACGTCGAC-TCGCTCCGTTACGGCAAGCT 1114829
Query 218073 CATGCTTATGACTGATGCTGATGTTGACGGGTCCCACATT 218112
|||| | ||| | ||| ||| || || || ||||||
Sbjct 1114828 CATGATCATGGCCGATCAGGATCACGATGGATCGCACATT 1114789
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||
Sbjct 992715 ATCGCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCG 992774
Query 142561 AGCCCCACATCGGGC 142575
|||||| ||||||||
Sbjct 992775 AGCCCCGCATCGGGC 992789
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||| ||||||||||||||||||||| | ||||||||||| || |||| ||||||||||
Sbjct 983962 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 983903
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 983902 CCCGCATCGGGC 983891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834995825217
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |