Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900014955.1_202016-12- 23] 137 sequences; 28,906,851 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq45 370 2e-97 seq89 136 7e-27 >seq45 Length=1063883 Score = 370 bits (410), Expect = 2e-97 Identities = 872/1297 (67%), Gaps = 36/1297 (3%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| ||||||||||||||||||| |||||| | | ||| |||| | Sbjct 40282 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTTGCGCGCCTCGGGT 40223 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 40222 GAATCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCG 40163 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| | || ||| |||||||| ||||| |||| Sbjct 40162 ATGGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGGTAGTAGTTGACGTCA 40103 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| |||| || |||||| Sbjct 40102 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAGCTTCTTGAAGTCG 40043 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | | || || ||| ||| || || | ||| |||| Sbjct 40042 TACACGCCG---TTCT------TGATGAAGCTCGGCAAAGCGAT-----CGA----GGCC 40001 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||| ||||| ||| |||| | ||||| || || || ||||| ||||| Sbjct 40000 AAGTTGCAAACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTC 39941 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTT-GCAGGCGTCCTTGTA 244809 ||||||| ||||| |||| || || || || || ||| |||| |||||||||| Sbjct 39940 GACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTTTGTTTGCAG-CGTCCTTGTA 39882 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCC 244868 ||||||||| || ||||| |||| |||||| |||| | ||| | ||| || | Sbjct 39881 GAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCGAGAATCGCA-TACCAAAGCTTTT 39823 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 || || |||| | || |||||| ||||| | ||| | | | Sbjct 39822 GCGCGGGGATCGTCTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGACGCGAA 39763 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988 |||| ||| |||| |||| ||||||||| || ||||| | ||| ||| | Sbjct 39762 ACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGGGGCCAGT 39703 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 ||||| || ||| ||| | || ||||||||| ||||| |||||||| || |||||| | Sbjct 39702 CGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATCCAGAGAGCAAAGAAGAGAT 39643 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | | | | || ||| ||| |||||| | || |||| || || ||||||| Sbjct 39642 CACGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGT 39583 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 || ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || |||| Sbjct 39582 CGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGT 39523 Query 245169 CCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | || | | || |||| ||| || || | || || |||||||| |||| || Sbjct 39522 CGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAGTAGC 39463 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288 | || ||||| |||||||| ||| | | | || |||| |||| || || | | Sbjct 39462 CATTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATAC 39403 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 | |||||| |||||||||||| ||||| |||||| ||||| ||||| || || Sbjct 39402 CACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGTGTGTCGTAGATGCCTTCAATCG 39343 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 || |||||| ||| ||| || ||||| || ||||| || | || | | | || Sbjct 39342 AATCGTCCTTCATCGTGACCAGGAAACAGGACGAGAGCTGCGGGTGAGGCGTTCCGGCGT 39283 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGG 245467 |||| || || || ||||||||| ||||||| |||| || | ||| ||||| ||| Sbjct 39282 TGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGC-GCTCGGACATGAAGTTGTACGACTGC 39224 Query 245468 AGCAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCT 245525 | ||| ||| ||||||| || |||||||| | |||| | |||||| |||||| Sbjct 39223 A--AGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGCT 39166 Query 245526 G-GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCT 245582 | |||||| ||| | | || | ||| | |||| |||||||||||||||||||| Sbjct 39165 GCGGGCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGCGTCT 39109 Query 245583 TGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCT 245642 |||| |||||||| |||||| || ||| || || | ||||| || ||| | | Sbjct 39108 TGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATAACGGCGCTGTTGAGGCGGT 39049 Query 245643 CGGCG-TGCTTCTGACTGACCTCGTAAAACTTTTGCG 245678 ||||| || ||| |||||||||| || ||||| Sbjct 39048 CGGCGTTGGCCATGA-TGACCTCGTACGTCTCTTGCG 39013 >seq89 Length=907297 Score = 136 bits (150), Expect = 7e-27 Identities = 188/260 (72%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | || || |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 77402 GGCTCGTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 77343 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| |||||| ||||| Sbjct 77342 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 77283 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| | |||||||| |||||| Sbjct 77282 TC---CCACCTCGAGC-GAAGACCTCACCCCGACACCGTCGCGCTCATCATCAAGGAGGC 77227 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| |||||||||||||| ||| | || || | || ||| || |||||||||| Sbjct 77226 CGTCGAGATCGAGAAGGAATTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCATGAA 77167 Query 42983 CCACGACCTCATGTGCAAGT 43002 | | ||||||||| ||| Sbjct 77166 TGCCAAGCTCATGTGCCAGT 77147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337582819120